Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02358 and BL03584

See Amino acid alignment / Visit BSNT_02358 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:54
# Commandline: needle
#    -asequence dna-align/BSNT_02358___ykuK.1.5803.seq
#    -bsequence dna-align/BL03584___ykuK.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02358___ykuK-BL03584___ykuK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02358___ykuK-BL03584___ykuK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02358___ykuK
# 2: BL03584___ykuK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 534
# Identity:     389/534 (72.8%)
# Similarity:   389/534 (72.8%)
# Gaps:          30/534 ( 5.6%)
# Score: 1346.5
# 
#
#=======================================

BSNT_02358___      1 ATGGCTGATTCTTTTCTGTTTTATAATCTTTCAGAAGCACAGATGACCTT     50
                     |||||||||||||||||.|||||.||||||||.||||..||.|||||.||
BL03584___yku      1 ATGGCTGATTCTTTTCTTTTTTACAATCTTTCTGAAGATCAAATGACATT     50

BSNT_02358___     51 TCAAGATGTGAT--GGA-ACGGCTTAAAGCCTTTGTTCAAA----AGGAC     93
                     ||..||.|||||  ||| ||    |||||   |.|||||.|    |.||.
BL03584___yku     51 TCCTGAAGTGATCGGGAGAC----TAAAG---TCGTTCATACGCCAAGAT     93

BSNT_02358___     94 CCCCGTTCTTCTTATGTGTTATCGATCGGAACCGATTCACAGGTTTACCG    143
                     ||..|..|....|||.||.|.||..|||||||.||.||.|||.|..|.|.
BL03584___yku     94 CCGAGGGCAAGCTATCTGCTGTCCGTCGGAACAGACTCGCAGATCCATCA    143

BSNT_02358___    144 CGATTACACAAAGTTTATTACCGCATTGCATTTGCATCGTACAGGCAAGG    193
                     ..|||.||||||.|||||.||.||..|.||||||||.||.|.||||||.|
BL03584___yku    144 GAATTGCACAAAATTTATCACAGCTATCCATTTGCACCGCAAAGGCAAAG    193

BSNT_02358___    194 GAGCTTGGGGCTGCTTGAAAAATCATACA-----GTCGACAGACCCATAC    238
                     ||||.||||||||..||||||     |||     |||.|||||||.||||
BL03584___yku    194 GAGCGTGGGGCTGTCTGAAAA-----ACACGGTTGTCAACAGACCGATAC    238

BSNT_02358___    239 ATAGCCTTCGGGAGAAGATTTCGTTAGAAACGGCGTACAGCCAAGAAACG    288
                     |||||||..|||||||.||.|||.|.|||||.||.|||||||||||.|..
BL03584___yku    239 ATAGCCTCAGGGAGAAAATATCGCTTGAAACAGCTTACAGCCAAGAGATT    288

BSNT_02358___    289 GCCGCTCATATTCTTGATGGACA-CTTAATGGATATTACCGATCTGCTCC    337
                     |||||..||.||.|..|||...| .||||| ||.||.|..||||||||.|
BL03584___yku    289 GCCGCATATCTTTTAAATGATTATTTTAAT-GAAATCATGGATCTGCTTC    337

BSNT_02358___    338 TGCCCTTTACCGGTGAGGGGGCGGATCTTACCTTTGAAGTTCACTTGGAT    387
                     |.||.|||||.|..|||||.||.|||.|.|||.||||||||||.||||||
BL03584___yku    338 TTCCGTTTACAGACGAGGGAGCAGATTTAACCCTTGAAGTTCATTTGGAT    387

BSNT_02358___    388 ATTGGGAAAAAAGGGCTTACAAAAGATCTGATCCAGGAAATGACTGGACG    437
                     ||.||.||||||||..|.|||||.|||.|.||.|||||||||||.|||||
BL03584___yku    388 ATCGGAAAAAAAGGAATGACAAAGGATTTAATTCAGGAAATGACAGGACG    437

BSNT_02358___    438 TATTACCTCCATGGGGAT-TGAGGCCAAAATAAAGCCGGATTCATACACT    486
                     .||.||.||.|||||||| || .||||||||.||.||.||.||.||.||.
BL03584___yku    438 AATCACTTCGATGGGGATCTG-CGCCAAAATTAAACCTGACTCCTATACA    486

BSNT_02358___    487 GCCTTC-AGCTATGCAAATCGTTTCACAAAATAA    519
                     | |||| |||||||||||.||.|.||||||||||
BL03584___yku    487 G-CTTCAAGCTATGCAAACCGGTACACAAAATAA    519


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