Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02357 and BL03583

See Amino acid alignment / Visit BSNT_02357 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:54
# Commandline: needle
#    -asequence dna-align/BSNT_02357___ykuJ.1.5803.seq
#    -bsequence dna-align/BL03583___ykuJ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02357___ykuJ-BL03583___ykuJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02357___ykuJ-BL03583___ykuJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02357___ykuJ
# 2: BL03583___ykuJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 243
# Identity:     197/243 (81.1%)
# Similarity:   197/243 (81.1%)
# Gaps:           3/243 ( 1.2%)
# Score: 813.0
# 
#
#=======================================

BSNT_02357___      1 ATGTCACAATTAATGGGTATCATCACACGGCTGCAAAGTCTGCAAGAAAC     50
                     ||||||||||||||||||||||||||..|.|||||.||.||||||||.||
BL03583___yku      1 ATGTCACAATTAATGGGTATCATCACGAGACTGCAGAGCCTGCAAGAGAC     50

BSNT_02357___     51 AGCGGAAGCGGCTAACGAGCCAATGCAGCGCTATTTCGAAGTGAATGGTG    100
                     .|||||.||.||....||.||.|.|||||||.||||.||||||||.||.|
BL03583___yku     51 TGCGGAGGCTGCCGGAGAACCGACGCAGCGCAATTTTGAAGTGAACGGAG    100

BSNT_02357___    101 AGAAAATATGCAGTGTTAAATATTTCGAAAAAAATCAAACGTTTGAACTG    150
                     |.|||||.|||||.||.||||||||.||||||||.|||||||||||.|||
BL03583___yku    101 AAAAAATTTGCAGCGTAAAATATTTTGAAAAAAACCAAACGTTTGAGCTG    150

BSNT_02357___    151 ACGGTTTTCCAAAAGGGTGAAAAACCTAACACATATCCGTTTGATAATAT    200
                     ||.||||..|||||.||.||.||.||||.|||||.|||||||||.||.||
BL03583___yku    151 ACAGTTTATCAAAAAGGAGATAAGCCTACCACATTTCCGTTTGACAACAT    200

BSNT_02357___    201 CGACATGGTTTCCATCGAAATCTTTGAACTTCTTCAGTAA---    240
                     |||.|||.||||.|||||||||||||||||.||||||.||   
BL03583___yku    201 CGATATGATTTCAATCGAAATCTTTGAACTGCTTCAGCAATAG    243


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