Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05986 and BL03578
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:02
# Commandline: needle
# -asequence dna-align/BSNT_05986___yxiO.1.5803.seq
# -bsequence dna-align/BL03578___yxiO.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05986___yxiO-BL03578___yxiO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05986___yxiO-BL03578___yxiO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05986___yxiO
# 2: BL03578___yxiO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1640
# Identity: 743/1640 (45.3%)
# Similarity: 743/1640 (45.3%)
# Gaps: 673/1640 (41.0%)
# Score: 1225.5
#
#
#=======================================
BSNT_05986___ 1 AT-GAT--------GAAACGTTTTACGAAACAAG---------------- 25
|| ||| |.||||| .||||||
BL03578___yxi 1 ATGGATACTCAGCCGGAACGT------GAACAAGCTGTAAAGCGGGCGCA 44
BSNT_05986___ 26 -AAAAC--------AGC--------------------------TGGGTAT 40
|.||| ||| ||||..|
BL03578___yxi 45 AAGAACGGGAATCAAGCTCTTTTTGACGCTGCCGATTCTTTCTTGGGCGT 94
BSNT_05986___ 41 TATATGACTGGGCAAATTC---TGCTTACTCAATTGTCGTGACCACCGCG 87
||||.||.|..||||||.| |..||..||||.|.|.|||||.|.|
BL03578___yxi 95 TATACGATTTTGCAAATACCATTTTTTCATCAAATATTGTGACGATC--- 141
BSNT_05986___ 88 GTATTTCC--GTTATTTTATAAATCAGCAG-----CTGCGGAAAGCGGTG 130
.|.||||| .|||||| .|||.|| |.|||.||| ||
BL03578___yxi 142 TTTTTTCCTTTTTATTT------GCAGGAGGCAGTCGGCGAAAA----TG 181
BSNT_05986___ 131 TCAGCGCCGCTCAATCGACTGCC---------TATCTGGGCTATACCATT 171
.|||| .|.||||...||.| ||||| .||||.|.|..
BL03578___yxi 182 CCAGC----ATGAATCAGGTGGCAAGCACTTTTATCT--CCTATTCGAAC 225
BSNT_05986___ 172 G----CGATTTCAACGTTTATTCTTGCGATGCTCGGTCCTATTTTAGGCA 217
| || |||..|||.|.||||..||..||...|||.|.||.||
BL03578___yxi 226 GCAGCCG----CAAGCTTTCTGCTTGTCATTTTCACGCCTTTATTCGG-- 269
BSNT_05986___ 218 CA------ATCG-CCGACTATGAAGGG-TGCAAGAAAAAGTTCTTCG--- 256
| |||| |||| |.||| .|.||||||||.|.|.|||
BL03578___yxi 270 -AGTGCTGATCGACCGA-----ACGGGCAGAAAGAAAAAATACATCGGCC 313
BSNT_05986___ 257 -GTTT------CTTTGTGT---------CA-----------------GCC 273
|||| .||||||| || |||
BL03578___yxi 314 TGTTTACGATGATTTGTGTTTCATGCACCATTTTAATGGGGGTTTTTGCC 363
BSNT_05986___ 274 GGTG--TCG--CCAGCA----------------CCGCGATGCTCGCCTTT 303
||.| ||| .|||.| ||||.|| ||||.
BL03578___yxi 364 GGGGCTTCGTTTCAGAAGGACATATACGGGCTTCCGCTAT-----CCTTG 408
BSNT_05986___ 304 ATCC----CAAGTGAGCAT-----TGGCTGCTATTGCTACTGTTTTATAC 344
|||| | ||.|.||| ||.|.|| |..|||||
BL03578___yxi 409 ATCCTTGTC--GTCATCATGTTTGTGACCGC-------AAAGTTTT---- 445
BSNT_05986___ 345 GATATCGGCTATCGGTTTTTCCGGCGCCAAT--GTGTTTTATGA------ 386
.||||| .|||..|| | |||||.|||||
BL03578___yxi 446 -------TCTATC----ATTCAAGC-----TTGGTGTTCTATGATACGAT 479
BSNT_05986___ 387 --TGCCTTTCTCGTGGAC----------GTCACGC-CTGA----GAAACG 419
||.||..||.|.|||| .||.||| ||.| |...||
BL03578___yxi 480 TTTGGCTGACTTGGGGACAAAAGAAGAAATCCCGCTCTTATCAGGTTTCG 529
BSNT_05986___ 420 GA--TG-AATCTCG--TCTCGGCACGGGGTTTT----GGCTTA---GGAT 457
|| || ||||..| |.||||||| ||| ||.||| |.||
BL03578___yxi 530 GAATTGCAATCGGGTATATCGGCAC-----TTTAGCCGGGTTAACGGTAT 574
BSNT_05986___ 458 ACATT------GGC-AGCACGATT--------CCATTTAT--CATCAG-- 488
||.|| ||| |.||.|||| .||||.|| |.||.|
BL03578___yxi 575 ACCTTCTTGTCGGCAACCAGGATTTTCACCGCGCATTCATCCCGTCGGCT 624
BSNT_05986___ 489 ----TATTGCTGT--------CATC-----CTGCTC-GCAC--AAGCAGA 518
|.||.|||| |.|| |||||| .||| ||| |||
BL03578___yxi 625 CTCTTGTTTCTGTTTTTTTCACTTCCGTATCTGCTCTTCACGAAAG-AGA 673
BSNT_05986___ 519 GACGATTCCAGTGTCTGTATCGG--CCGCAAG-CCAGCTGTCCTTTTTCA 565
.|.|| ..|.||| |||.||| ..||...||.||||||
BL03578___yxi 674 AAAGA-----------AAACCGGAACCGAAAGAAAAGAAATCGTTTTTC- 711
BSNT_05986___ 566 TAACGGCTGCCTGGTGGGGGCTGTTCACTATCCCAATGATT----AAACA 611
|.|||.|.| |||| || ||| |.|||
BL03578___yxi 712 -AGCGGATAC----TGGG----------------AA--ATTGTGCAGACA 738
BSNT_05986___ 612 TGTCCATCAACGCTATTACATCAAAAGAGAACC-----TCATATT-GTCA 655
| ||||.|..||| |.||.|.|.| |.|| ||.|||| .|.|
BL03578___yxi 739 T-----TCAAAGACATT-CGTCTATATA-AGCCGGTCTTCTTATTCATGA 781
BSNT_05986___ 656 TCAACAGCTTT----------AAGCG---GCT-CGGCCAGA-CGATGA-A 689
||..|..|||| |.||| ||| |.||.|.| |.|||| .
BL03578___yxi 782 TCGCCTACTTTTTCCTGAATGATGCGCTTGCTACAGCAATAGCCATGATG 831
BSNT_05986___ 690 ACGGATCAGGCAATACCGGGCA---CTTTTCC-----------TCTTTTT 725
.|||.|.|..|||.|.|||.|| .||||.| ||.||||
BL03578___yxi 832 GCGGTTTATTCAAAAACGGTCATCGGTTTTACGACCGGACAATTCGTTTT 881
BSNT_05986___ 726 GCT---CGCTTATTTCTTTTATATCGACGGAGTCGGCA----CGATT-AT 767
||| | |||.|||||..|.||||.| ||| ||.|| ||
BL03578___yxi 882 GCTTTAC-CTTGTTTCTACTGTATCAA--------GCATCATCGGTTCAT 922
BSNT_05986___ 768 TACGATG-TCGACATCCTATG--GATCAGATTTAGGGATCGGTTCCTCAA 814
|.| || |||.|.| |.|| ||..||| ||||| |..|||
BL03578___yxi 923 TTC--TGCTCGGCTT--TGTGACGAAAAGA-------ATCGG--CGCCAA 959
BSNT_05986___ 815 GC-CTCCTGATCATCCTATTTGTCACCCAGGTGGTCGC-----TG--CAC 856
|| |.| |.|||.|| ||||| |.||| || |||
BL03578___yxi 960 GCACGC--GGTCAGCC---TTGTC---------GCCGCCATTATGATCAC 995
BSNT_05986___ 857 CGTTTT--CGATTGTATACGGAAAACTGGCAGAACGCTTCACGGGGAAGA 904
||.||| |||||| ||
BL03578___yxi 996 CGCTTTGACGATTG----------------------------------GA 1011
BSNT_05986___ 905 CCATGCTGTACGTCGGGATCG-TCATTTATATGATCGTCTGCGTGTATGC 953
.||||| |||.||..|.|| ||.|.|.|..||| ||||.|.| ||
BL03578___yxi 1012 GCATGC---ACGACGTCAACGCTCTTGTTTTGGAT----TGCGGGGA-GC 1053
BSNT_05986___ 954 CTATTTTATGAAGACAACGATTG-ATTTCTGGATACTGGCTATGCTTGTC 1002
.|.|| || | ||||| |||||..
BL03578___yxi 1054 TTGTT------------CG---GCATTTC--------------GCTTGGA 1074
BSNT_05986___ 1003 GCCAC----CTCGCAGGGCGGTATTCAAG--CCCTAAGCCGTTCCTATT- 1045
|.||| .||||| ||||| |.|| .|||
BL03578___yxi 1075 GGCACATGGGTCGCA---------TCAAGGACACT----------GATTA 1105
BSNT_05986___ 1046 TCGCCAAGCTTGTGCC--------AAAGCGCCACGCCAATGAATTCTTTG 1087
||| ||||...||| ||||.|.| |||||.||.|
BL03578___yxi 1106 TCG---AGCTGACGCCAGAACATAAAAGAGGC--------GAATTTTTCG 1144
BSNT_05986___ 1088 GCTTCTACAACATT--TTT-----GGAAAATTCGCCTCAATTATGGGGCC 1130
|.||.| || ||| |||||| ||.|.||.|||.|.||.||
BL03578___yxi 1145 GATTGT------TTGCTTTGTCGGGGAAAA-TCTCTTCCATTTTCGGTCC 1187
BSNT_05986___ 1131 GCTACT--------------CATTGCCGTTACCGCCCAG----CTGACCG 1162
|.|.|| |.||||.||| ||| || ||
BL03578___yxi 1188 GGTCCTCTACGGATCGATTACTTTGCTGTT------CAGGGATCT---CG 1228
BSNT_05986___ 1163 GGAAATCCTCGACTGC-----GGTGTTCAGCCTGATCATTTTGTTTGTGA 1207
|||| |.|.|.|.|| ||..|| |.|||| |||.| |||.|
BL03578___yxi 1229 GGAA--CATGGCCAGCCGAATGGCTTT----CGGATC-TTTAG--TGTTA 1269
BSNT_05986___ 1208 TTGG----TATTG---TGATTCTTGCCTTTGTTCCCGAGGAAACCAGCAC 1250
|||| .||.| ||||..|| ||.||
BL03578___yxi 1270 TTGGCGGCGATCGGCCTGATCATT--------------------CATCA- 1298
BSNT_05986___ 1251 AGATGTCAGCCAGCAGCAAAA---TGACCTGCCCCTTTAA 1287
|.||||.| || |||||| |||
BL03578___yxi 1299 AAATGTTA---AG--GCAAAAGCTTGA------------- 1320
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