Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02316 and BL03559
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:50
# Commandline: needle
# -asequence dna-align/BSNT_02316___ykvV.1.5803.seq
# -bsequence dna-align/BL03559___stoA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02316___ykvV-BL03559___stoA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02316___ykvV-BL03559___stoA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02316___ykvV
# 2: BL03559___stoA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 553
# Identity: 332/553 (60.0%)
# Similarity: 332/553 (60.0%)
# Gaps: 116/553 (21.0%)
# Score: 937.0
#
#
#=======================================
BSNT_02316___ 1 ATGTTGACGAAG-----------------CGCTTGCTTACTATATACATT 33
||| ||||| |||| |||.
BL03559___sto 1 ATG----CGAAGAATCAGTCTCATTTACCCGCT-------------CATC 33
BSNT_02316___ 34 ATG----TTATTA--GGGTTGATT-GCATGGTTTC---------CATGTG 67
.|| ||.||| ||||| ||| |.| |||| |||.||
BL03559___sto 34 CTGCTGTTTTTTACCGGGTT-ATTCGTA---TTTCAGCCGCAGGCATCTG 79
BSNT_02316___ 68 CGGCACAAGCTGAGGAAAAACAGCCTGCTGTTCCCGCTGTTTTTCTTATG 117
|...|||||||..| ||.||.||..|.|..|||
BL03559___sto 80 CAAAACAAGCTTCG------------------CCGGCAGTCATGCAGATG 111
BSNT_02316___ 118 AAAACGATAGAAGGGGAGGACATC-TCGATT----CCGAATAAAGGGCAA 162
||.|||.|.|||||..||..|.|| || ||| ||| ||||.||.
BL03559___sto 112 AACACGGTCGAAGGTCAGCGCGTCGTC-ATTCCCGCCG----AAGGCCAG 156
BSNT_02316___ 163 AAAACAATTCTCCATTTTTGGACGTCATGGTGTCCGCCCTGC----AAAA 208
||.||.||..|.||||||||||||.|.|||||.|||||.||| ||
BL03559___sto 157 AAGACGATCGTTCATTTTTGGACGACCTGGTGCCCGCCATGCCGTGAA-- 204
BSNT_02316___ 209 AGGAGCTTCCACAGTTTCAATCGTTTTATGATGCCCATCCATCCGACAGT 258
||||||||.|..||.|||||.|..|||||...|.|.|.||||| |.
BL03559___sto 205 --GAGCTTCCGCGATTCCAATCCTACTATGAAAGCAAGCAATCCG---GC 249
BSNT_02316___ 259 GTAAAGCTGGTAACGGTGAATTTAGTGAATTCGGAACAAA---ATCAGCA 305
||.|||||.||.||.||.||||||.|||||.|.|||.|.| |.||| |
BL03559___sto 250 GTCAAGCTCGTGACCGTTAATTTACTGAATGCCGAAAAGAACGAACAG-A 298
BSNT_02316___ 306 AGTCGTTGAAGACTTTATTAAAGCAAATAAGCTGACGTTTCCAATTGTCC 355
|| ||..||.|.||||||||||||||.||||||||.|||||.||.||..
BL03559___sto 299 AG--GTAAAACAGTTTATTAAAGCAAACAAGCTGACATTTCCGATCGTTT 346
BSNT_02316___ 356 TTGACTCAAAAGGG-GAATTGATGAAGGAGTATCATATCATCACGATCCC 404
||||| .||||||| ||..|||||||.|..|||.|..||||.||.||.||
BL03559___sto 347 TTGAC-AAAAAGGGTGAGATGATGAAAGCATATAAAGTCATGACAATTCC 395
BSNT_02316___ 405 AACATCATTTTTGCTGAATGAAAAGGGAGAAATTGAAAAAACAAAAATT- 453
.||..|.|||||..|.||||||||.|||||..|.||.||||| .||
BL03559___sto 396 TACGACTTTTTTCTTTAATGAAAAAGGAGAGCTGGAGAAAAC----GTTT 441
BSNT_02316___ 454 ---GGCCCGATGACGGCGGAACAACTGAAGGAATGGAC-GGAAGAATAG- 498
|||||.||.||.|..|||||..|||||||||||.| || |||.||
BL03559___sto 442 GTCGGCCCCATTACTGTAGAACAGATGAAGGAATGGGCAGG--GAAAAGC 489
BSNT_02316___ 498 --- 498
BL03559___sto 490 TGA 492
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