Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02304 and BL03545
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:49
# Commandline: needle
# -asequence dna-align/BSNT_02304___ykvI.1.5803.seq
# -bsequence dna-align/BL03545___ykvI.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02304___ykvI-BL03545___ykvI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02304___ykvI-BL03545___ykvI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02304___ykvI
# 2: BL03545___ykvI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1129
# Identity: 720/1129 (63.8%)
# Similarity: 720/1129 (63.8%)
# Gaps: 179/1129 (15.9%)
# Score: 2210.5
#
#
#=======================================
BSNT_02304___ 1 ATGGAACAATCAAAAGGGTCTGCAAGTCAGCTTGCTTTTGTGTATGTCGG 50
|||...||||||.||||.||.||...||||||.||.|||||.|||||.||
BL03545___ykv 1 ATGAGTCAATCACAAGGATCAGCCTTTCAGCTGGCATTTGTTTATGTAGG 50
BSNT_02304___ 51 CACAGTAGTCGGAGCTGGATTTGCGACTGGGAGGGAAATTGTTGAGTTTT 100
.||.||.||||||||.||||||||.|||||.||.|||||.||.|||||||
BL03545___ykv 51 AACGGTTGTCGGAGCCGGATTTGCAACTGGAAGAGAAATCGTCGAGTTTT 100
BSNT_02304___ 101 TTCTGAAG-TTCGGCTGGTTCGGTTTATTCGGCATTCTCGTCAGCGG-CG 148
|| |.||| |||||||||...||.||...|||.|||.|..||||||| |.
BL03545___ykv 101 TT-TTAAGATTCGGCTGGCCGGGATTGGCCGGAATTTTGATCAGCGGACT 149
BSNT_02304___ 149 GAATGTTTACGTTTCTGGGCGCCAAGCTGATGATCATT----TCAAAGCG 194
| ||||||||||||||.||.||.||..|||||.|.||| ||| |
BL03545___ykv 150 G-ATGTTTACGTTTCTCGGTGCAAAAATGATGCTGATTGCGGTCA----G 194
BSNT_02304___ 195 AATCAATGCCAAGTCATACCAAGAAATGAACATCTTTTTGTTCGGGGCGG 244
|||||||||||||||.||.||.||..||||.|..|.|||.|| |||
BL03545___ykv 195 AATCAATGCCAAGTCTTATCAGGAGCTGAATAAATATTTATT-----CGG 239
BSNT_02304___ 245 C----GGCTGGGCGGA---TTATCAATGTATTTATGCTGTTTGTTCTCCT 287
| .|||.| ||| ||.|||||||.||.|||||..|.|||.|.||
BL03545___ykv 240 CCATACGCTTG--GGAAATTTGTCAATGTCTTCATGCTCGTGGTTTTGCT 287
BSNT_02304___ 288 CGGAGTTACATCTGTCATGCTTTCAGGAGCAGGGGCGCTTTTTGAGGAAC 337
|||.||.||.||.||||||||.||.|||||.||||||.|.|||||.||||
BL03545___ykv 288 CGGCGTGACGTCCGTCATGCTGTCCGGAGCGGGGGCGATATTTGAAGAAC 337
BSNT_02304___ 338 AATTGGGGATGTCCGCTCAGATT-------------GGGATGCTTATTAC 374
| ||||.|.|| ||||||.||...||
BL03545___ykv 338 A-------------GCTCGGCTTTTCAAACCAAGCGGGGATGATTGCGAC 374
BSNT_02304___ 375 AATCGGTCTGAGCTTAATTGTGATGACTAGAGGAGTAAAAGGCATTTTCG 424
.||.|...||||..|..||||.||||..|..||.||.|||||.||.||||
BL03545___ykv 375 GATTGCCTTGAGTCTGTTTGTCATGATGAAGGGCGTTAAAGGGATATTCG 424
BSNT_02304___ 425 GTGTCAATGTGTTTGTTGTTCCCCTTTTAATCCTCTTTTCAATGATTGTG 474
|.||||||||..||||.|||||.||..| .|.|||.||||..| ||||.
BL03545___ykv 425 GCGTCAATGTCATTGTCGTTCCGCTGCT--GCTTCTGTTCACAG-TTGTC 471
BSNT_02304___ 475 GTGGCC-----GACTCTTTTATATTCAG-----CGAATCACGAAACGCAG 514
|| || |||||.|||||.||||| ||.| ||.||.||
BL03545___ykv 472 GT--CCTGTTTGACTCGTTTATTTTCAGAGGGCCGGA----GATACACA- 514
BSNT_02304___ 515 CTCAGTGGGTTTGGCCGCAT-------------CGATGGGATTGGCTGTT 551
.||||||.|||| ||||.||||| ||
BL03545___ykv 515 --------ATTTGGCGGCATTTTCGGCAAACCCCGATTGGATT-----TT 551
BSNT_02304___ 552 ATCAGCCTTTTCTTACGGGGCTTTGAATTTATCGCTTGCCCAAGCAGTTT 601
|||.||..|.||.|||||.|||||.|||||.|||||.||.||.||.|||.
BL03545___ykv 552 ATCCGCTGTCTCGTACGGCGCTTTTAATTTGTCGCTCGCACAGGCTGTTC 601
BSNT_02304___ 602 TGGTTCCGCTGGC----GAA-TGAAATGTCCTCGGAGAAAG--TGATCAA 644
|.||.|||.|.|| ||| ||||| ||| |||.| ||||.|.
BL03545___ykv 602 TCGTGCCGATCGCTTCTGAACTGAAA--TCC-----GAACGCCTGATTAT 644
BSNT_02304___ 645 AAAAGGCGCTTTAATCGGAGG----CACGATGCTGACGATTGTGCTGTCC 690
||||||.||.||||||||||| | ||||.||..|||||.||..|
BL03545___ykv 645 AAAAGGAGCATTAATCGGAGGGGTTC----TGCTTACCCTTGTGTTGGTC 690
BSNT_02304___ 691 GGGAGTTTTCTGTCTTTGTCAACTCTTCCGGATGTATTTTTGTATGATAT 740
|..||.|||||||||.|.|||||..|.||.||||...||||.|||||..|
BL03545___ykv 691 GCAAGCTTTCTGTCTCTTTCAACATTGCCTGATGCCCTTTTATATGAAGT 740
BSNT_02304___ 741 ACCGATGGCGCAAGTGGTTTATCTCTT--TGCA-CGATCTGTCCATTTGA 787
.||||||||.||.||.||.| ||.| |.|| |..|||||||||.|.|
BL03545___ykv 741 CCCGATGGCACAGGTCGTAT---TCATAGTCCAGCATTCTGTCCATATCA 787
BSNT_02304___ 788 TTTATTTACTCATTATTTTCGGAGAAGTGTTCACATCAGTTATCGGTAAT 837
|.|||.|..|.||.||||||||.|||||.|||||||||||.|||||.|||
BL03545___ykv 788 TCTATCTGTTTATCATTTTCGGGGAAGTCTTCACATCAGTCATCGGCAAT 837
BSNT_02304___ 838 CTATATGGATTAGAAAAACA----AGTGCAAAGCTTTCTTCCAGTGAAAA 883
.||||.||..|.|||||.|| |.||.| |.|.|||...|.||||
BL03545___ykv 838 TTATACGGTCTTGAAAAGCAGATTAATGAA----TATATTCATATAAAAA 883
BSNT_02304___ 884 GCAAATA------TATCTT-----TGCAGCCATTATGATCACGGCTTATA 922
||...|| |||||| |||.|.|| ||| ||..
BL03545___ykv 884 GCCTGTATGTGTTTATCTTCATCCTGCTGACA-----ATC------TACT 922
BSNT_02304___ 923 TTACGAGCCAAATAGGGTACGGCAGGCTTATTTCAACGATTTATCCCTTG 972
|.|||.|.|||||.||.|||||.|.|||.||.||.||.||||||||.|||
BL03545___ykv 923 TGACGGGACAAATCGGCTACGGAAAGCTGATATCGACCATTTATCCTTTG 972
BSNT_02304___ 973 TTTGGCTATGTGAGCCTGGCCTTCATAGGCGCTTTGCTTT-------GCA 1015
||.|||.|..|||||||.|.|||.| |||.|||| .||
BL03545___ykv 973 TTCGGCCAGCTGAGCCTCGTCTTTA-------TTTTCTTTCTGATCGTCA 1015
BSNT_02304___ 1016 AAAAAGCTCCTCGGCGGCGCAGTTTATAA 1044
|||..|..|||..||| ||.|
BL03545___ykv 1016 AAAGGGTGCCTGAGCG---------ATGA 1035
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