Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02292 and BL03543

See Amino acid alignment / Visit BSNT_02292 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:49
# Commandline: needle
#    -asequence dna-align/BSNT_02292___spo0E.1.5803.seq
#    -bsequence dna-align/BL03543___spo0E.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02292___spo0E-BL03543___spo0E.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02292___spo0E-BL03543___spo0E.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02292___spo0E
# 2: BL03543___spo0E
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 285
# Identity:     169/285 (59.3%)
# Similarity:   169/285 (59.3%)
# Gaps:          69/285 (24.2%)
# Score: 442.0
# 
#
#=======================================

BSNT_02292___      1 ATG----GGCGGTTCTTCTGAACAAGAAAGATTGTTGGTGTCTATTGATG     46
                     |||    ||    |.|..||||.|||||..||||.|.||.||.||  ..|
BL03543___spo      1 ATGCAAAGG----TATATTGAAAAAGAAGCATTGCTCGTTTCCAT--CAG     44

BSNT_02292___     47 AAAAAAG----AAAGTTAATGATAGATGCCGCTAGAAAGC-AGGGATTTA     91
                     .||.|||    |||  |.|||.|.||.|||||| ||||.| |.||||.||
BL03543___spo     45 CAAGAAGCGGCAAA--TGATGGTTGAAGCCGCT-GAAATCTATGGATATA     91

BSNT_02292___     92 CAGGGCATGACACGATCAGGCACAGTCAGGAGCTGGATTGTTTAATAAAT    141
                     |||||.||||.||||||||||..||.||||||||||||...|||||..||
BL03543___spo     92 CAGGGGATGAAACGATCAGGCGGAGCCAGGAGCTGGATCAATTAATTTAT    141

BSNT_02292___    142 GAATATCACCA---GCTTATGCAAGAAAACG-----AACATTC----CCA    179
                     ||||||||..|   |..||||.|.|||||||     .|||.||    .||
BL03543___spo    142 GAATATCAAAAATTGTCTATGAATGAAAACGCGCCAGACAATCTGCTGCA    191

BSNT_02292___    180 AGGGATTCAAGGCCTTGTAAAGAAATTAGGCTTGTGGCCCCGCAGAGA-T    228
                     |  ||||       ||         |||||||         |||..|| |
BL03543___spo    192 A--GATT-------TT---------TTAGGCT---------GCATCGACT    214

BSNT_02292___    229 GTTATGCCAGCATATGATGCAAATA-----AATAG    258
                     | |.||||.|   .|||  .|||||     .||||
BL03543___spo    215 G-TCTGCCCG---TTGA--AAAATATACGGCATAG    243


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