Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02265 and BL03530
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:47
# Commandline: needle
# -asequence dna-align/BSNT_02265___ykrI.1.5803.seq
# -bsequence dna-align/BL03530___ykrI.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02265___ykrI-BL03530___ykrI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02265___ykrI-BL03530___ykrI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02265___ykrI
# 2: BL03530___ykrI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1254
# Identity: 755/1254 (60.2%)
# Similarity: 755/1254 (60.2%)
# Gaps: 270/1254 (21.5%)
# Score: 2097.0
#
#
#=======================================
BSNT_02265___ 1 ATGAGAAGAGGGATTATAGTAGAGAAAAATAAAAAATTCGTCACGTTGCT 50
|||||||||||.|||||.|||||.||||||||||||||||||||.|||||
BL03530___ykr 1 ATGAGAAGAGGAATTATTGTAGAAAAAAATAAAAAATTCGTCACATTGCT 50
BSNT_02265___ 51 GACCCCTGACGGACAATTTTTAAAAGCCAAAAATGATCGACACAG----- 95
.|||||||||||||||||||||||||| ||.||.| |||.||
BL03530___ykr 51 AACCCCTGACGGACAATTTTTAAAAGC----AAAGAGC-ACAGAGGAAGA 95
BSNT_02265___ 96 CTATGAAATCGGAGAAGAAATCATGCTT---CCGAGTGAAACACGCATGG 142
.|||||||||||..|.||||| ||||| |||.| ||.||..|.|||.
BL03530___ykr 96 TTATGAAATCGGTCAGGAAAT--TGCTTTTCCCGCG-GAGACGAGAATGT 142
BSNT_02265___ 143 GCAGAAGG---GCCAGCTTTTTTGATTTTTTTAAACTGCGCCCTTTCAAA 189
..|||||| ||..|||||||||||.|..||...||.||.||..|.|||
BL03530___ykr 143 CGAGAAGGCGTGCGGGCTTTTTTGATCTGCTTTCGCTCCGTCCGCTGAAA 192
BSNT_02265___ 190 ATGGGGATTTTTACGATGACTGCTATTATGCTCTTTATTTTTATAGTTC- 238
...||..|||||.|.||..|.||.||.|||||..|...|||.|| |.||
BL03530___ykr 193 GCCGGCGTTTTTTCAATCGCCGCGATCATGCTGCTCGCTTTCAT-GATCA 241
BSNT_02265___ 239 TCCCCGTTTTTTCTAATAATAAGGCCTATGCGTATATGACAATCGATATC 288
||||.|.|.|||..||.|||||.||.||.||.||.|||||.|||||||||
BL03530___ykr 242 TCCCTGATGTTTTAAACAATAAAGCATACGCCTACATGACGATCGATATC 291
BSNT_02265___ 289 AATCCAAGCGTCGAAATGGCGTTAAACAGCGATTATGAAGTGATTGAACT 338
||.||||||.|.|||.||.||.|.||||...|.|.||||||.||.||..|
BL03530___ykr 292 AACCCAAGCTTTGAATTGACGCTCAACAAAAACTGTGAAGTTATCGATTT 341
BSNT_02265___ 339 GACGCCTCTAAACGATGAGGGACAGAAGGTCGTGAATG----ATATAGAT 384
|..|||.||.|||||.||.|| ||||| |.|.|||| .||||.|.
BL03530___ykr 342 GGTGCCGCTGAACGAGGATGG---GAAGG-CCTTAATGGATAGTATAAAA 387
BSNT_02265___ 385 GATTGGGAGAAGACTGATTTTAAAAAGGTGATTGACGATATTATAACCGA 434
.|||||||.|||.||||.||||||.|.|||||....||.|||.| |||
BL03530___ykr 388 AATTGGGAAAAGTCTGACTTTAAAGAAGTGATCAGTGAAATTGT---CGA 434
BSNT_02265___ 435 CTGCAGTGAACA---CGGGTATGTAAAAAAATCGAAAGAAATATTGATTT 481
...|||.||..| |||.|||||.|...||||.||||||.|..|.||..
BL03530___ykr 435 AGACAGCGATAAGAGCGGTTATGTCACCGAATCAAAAGAAGTGCTTATCG 484
BSNT_02265___ 482 CCACTGTTTATGAAAACACAGAAGACAATACATATAAAAAGGCTGTGA-- 529
||||.||.||.|||||||..|||||..|.||.||| ||||| ||
BL03530___ykr 485 CCACAGTATACGAAAACAATGAAGATGACACGTAT---AAGGC---GACG 528
BSNT_02265___ 530 --AAAAACAGCTGA-----ATGATGTGACTGAAAAATATAAAACGA-CAT 571
|||| ||| || |||||||..|..|||||| |||| ||
BL03530___ykr 529 GTAAAA--AGC-GAAATCGATGATGTAGCGAAAAAAT-----ACGAGCA- 569
BSNT_02265___ 572 ACCGC-----------ATGGAATCTCTCGAGTCAGATATGCAAACGAGGG 610
|| ||||||.|..|.||.|||||..|..|.|||.|.|
BL03530___ykr 570 ---GCAGAATTATAAGATGGAAGCGGTGGAATCAGACCTTGATACGCGTG 616
BSNT_02265___ 611 AAAAAGCGAAGAAAGAAGGCGTCTCAACAGGCAGCTACATCAAATC---- 656
.||||||..|.|||||||||.|||||||||||.|.||.|||...||
BL03530___ykr 617 CAAAAGCCCAAAAAGAAGGCATCTCAACAGGCCGTTATATCCGTTCCCAC 666
BSNT_02265___ 657 --AAATGAA-AAGAATGACAATAAAGATATAAAAGATGACTCCAGCAAAC 703
|.||||| .|||| |||||.|| .|||||||| ..||
BL03530___ykr 667 AAAGATGAATTAGAA-GACAAAAA------CAAAGATGA-------TGAC 702
BSNT_02265___ 704 CATCCGGGGAAGAGGATCAAAAGAGTGATGAAAATGAGGATGAAAACACC 753
.|| |||.|..| |||||| ||||.|||||.||||.||||||||.
BL03530___ykr 703 AAT-----GAAAATAA--AAAAGA-TGATCAAAATCAGGAAGAAAACACA 744
BSNT_02265___ 754 GATCAAACTGACACCCAGGACAGCAAGC--------AAGGAGATAA---T 792
|...||| ||| ||.|||| |||.||||.| .
BL03530___ykr 745 GGAGAAA---------AGG--AGAAAGCTGTGAAAGAAGAAGATCAGCCG 783
BSNT_02265___ 793 GAACAGCTGAATGATGCGGATTCCGGAGACCAGAAAGAAG-AGA-----A 836
||||||| ||.||||| .|.||||||| ||| |
BL03530___ykr 784 GAACAGC------ATACGGAT---------GATAAAGAAGCAGATACGGA 818
BSNT_02265___ 837 AG------CGGATGAC----------CAGATTGATGAT-AGTGACAA--A 867
|| ||||.|.| |||| |||.||| |||..||| .
BL03530___ykr 819 AGATCATCCGGACGGCGAAAAACCTTCAGA-TGAAGATCAGTCTCAACCT 867
BSNT_02265___ 868 GATAAAAAAATAAAGGAATCAGATGAAAACACAAATACCGAAAAAGATGG 917
|||.||.|||| ||||..|| |||||
BL03530___ykr 868 GATCAAGAAAT---GGAAAAAG-------------------AAAAG---- 891
BSNT_02265___ 918 GGACCATGAG-CAAA---CCCCAATAC--AAGATCCTC---AAGATAAAG 958
||| |||| |||.||||| ||.|.|||| ||.||||..
BL03530___ykr 892 -------GAGTCAAATTCCCCTAATACCAAAAACCCTCAGGAACATAACC 934
BSNT_02265___ 959 GAAATGAAAATAACGG--CGCTGAC-----AAGGGCCAAAGCCAATATCA 1001
..|||||.||..|||| .||.||| |||| ||.|||||.| |
BL03530___ykr 935 ATAATGACAAAGACGGTCAGCAGACGGAGGAAGG---AACGCCAAAA--A 979
BSNT_02265___ 1002 CAGGGACTGGAACAATGGTGAACAAG---GC----AAGAACCGTTCTTCG 1044
..||..|.||..||| |.|||| || ||..||| |.|||
BL03530___ykr 980 GCGGTTCCGGTTCAA-----ATCAAGAGAGCTCTAAATCACC-TCCTT-- 1021
BSNT_02265___ 1045 TCCAGAAGG-GATAACG-CTTCAGACCGACGTAATCCAAACGGCTACAGC 1092
.|||.|||| ||.||.| ||||.|| |||||||
BL03530___ykr 1022 ACCAAAAGGAGAAAAAGCCTTCTGA----------CCAAACG-------- 1053
BSNT_02265___ 1093 AGTGATAATAATTCAGCTCAAAATGAAGATTCGCCGAGTGCCCCCGGCGA 1142
|||| ||.|.|||.||.|||||||.|..||||||||
BL03530___ykr 1054 ------AATA---------AACAAGAATATCCGCCGAGCGGGCCCGGCGA 1088
BSNT_02265___ 1143 ATAA 1146
||||
BL03530___ykr 1089 ATAA 1092
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