Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02842 and BL03514
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:36
# Commandline: needle
# -asequence dna-align/BSNT_02842.1.5803.seq
# -bsequence dna-align/BL03514.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02842-BL03514.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02842-BL03514.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02842
# 2: BL03514
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1018
# Identity: 487/1018 (47.8%)
# Similarity: 487/1018 (47.8%)
# Gaps: 365/1018 (35.9%)
# Score: 841.0
#
#
#=======================================
BSNT_02842 1 TTGATAAACTA-----TGATTTA--ATAAT--TGATGGCAAGTA----TT 37
|..|||.|| ||| ||| ||||| |..|||..||.| ||
BL03514 1 --GTGAAATTATTCCTTGA-TTACGATAATGGTCTTGGGGAGCAGAGCTT 47
BSNT_02842 38 TAAGCGAGAC-GCTTCCAGGTGTCTCGCTTTCTT----CATTTAGG---- 78
.|| .||.| ||||| ||||.|| |.||||.|
BL03514 48 AAA--TAGCCTGCTTC-----------CTTTTTTTGAACCTTTAAGCTTC 84
BSNT_02842 79 ---CCGGAGGCGCCAGTGTTCGAAAGGCAGACGG---------CAGGAAC 116
||.||.||.||.|.|.|.||..|..|.|||| |..|||.
BL03514 85 ACACCTGAAGCACCGGGGATTGATCGTGAAACGGTTAGCATCCCGAGAAT 134
BSNT_02842 117 AAACGCTCTCATTAATGGGACGATGATGCTTAAGCGGGGGAACA----CC 162
|||| ||| |.|| |.|||..|| |||| |.
BL03514 135 AAAC-------------GGA-GTTG-TCCTTCCGC-----AACATCCTCG 164
BSNT_02842 163 GGGCGT----TACACAGAAAGAAAAATCA------------ATATAAA-- 194
||..|| ||.||||||.|||||||.| ||.||||
BL03514 165 GGATGTCACATATACAGAACGAAAAATAACCGTTGAATTTTATTTAAATT 214
BSNT_02842 195 -----AGTGCTTGTGGAGGCAAACAGTTCTTATCAGTTCCAGATCAAAAG 239
|..||| |.|||| |.||||||.| |.|.|.|
BL03514 215 CAATCATCGCT-------GAAAAC---TTTTATCAAT------TTAGACG 248
BSNT_02842 240 GGATGCCGTCTACAACCTTTTTGTAAAAGAGGAC----CCTTACTATGTA 285
||| || |.|||...|||||.||.|| |.| ||.||.|||
BL03514 249 GGA-GC--TTTACGCGCTTTTAGTTAA----GCCGTTTCCCTATTAT--- 288
BSNT_02842 286 ATCAATACACAGCA------GCCTTATAAACGATGGCTTGTTACATGTGA 329
||| |..||.| | |||..||...||.|..|..||.||.|||||
BL03514 289 ATC--TCGACCG-ATTTATTGCCGAATCTCCGTTTTCGGGTAACTTGTGA 335
BSNT_02842 330 TGACGCATTTTCAATTTATC----AAGAAAACGGTAAGAA----GTA--- 368
|| |.|.|||.| .|||| |||||||.|..||.|| |||
BL03514 336 TG--GAAATTTTA--GTATCCCAAAAGAAAAGGAGAAAAACTTTGTAACG 381
BSNT_02842 369 -TCAGGAAGTGGATATTACTCTAACGGCCATTCA-GGGGCTTGCTGAGTC 416
||| .|||.|| ||| ||||..| .||| |||.||.||.||.||
BL03514 382 TTCA--CAGTTGA-ATT----TAACAAC--ATCACGGGACTGGCAGAATC 422
BSNT_02842 417 TTTAAATGACAGCACTGCATCTATGGAATTGAAGGACGAAAAGTTTCACT 466
.|||| .|||| |||.||..| ||| .||||.|||.||.
BL03514 423 --GAAAT----TCACT---TCTCTGACA---AAG---CAAAATTTTGACG 457
BSNT_02842 467 T---------------AGGCATGAATATCC---GGCGGGAC--TCAACCC 496
| |||||||||.||.| .|||.||| |
BL03514 458 TTGAGCATTGGAGCCCAGGCATGAACATTCAAATGCGTGACGAT------ 501
BSNT_02842 497 CTGTGTTTCACTTTCAAAA---TAAAAA---TTC---TTTCGTTGTGGAT 537
|||...|.||..||||||| .|||.| ||| ||| ||
BL03514 502 CTGGAATACAGGTTCAAAAATCGAAAGAGGTTTCAGGTTT--------AT 543
BSNT_02842 538 AACATAGGGGACG------TAAAAC--TTGACCCGATTAACTACA--ATT 577
||||..||.||.| |.||.| ||| || ||| |.|
BL03514 544 AACACTGGTGATGCCTATATCAATCCTTTG----GA------ACATGACT 583
BSNT_02842 578 ACAACGTCGAAATGTACCTACAG-------GGTACTAATATTTCAATCAC 620
||||.||.| |||...| ||.|..|||.|..|.|||
BL03514 584 ACAATGTGG-------CCTTATGGGCGGCCGGAAAAAATGTGACGATC-- 624
BSNT_02842 621 TAATATCA--CA-ACAAACG----AAACCTTGACGTTGAACGGGAAATAT 663
|||| || |||||.| |||.||..|..||||||.||| ||
BL03514 625 ----ATCAACCATACAAATGGTGAAAAGCTGAAAATTGAACAGGA---AT 667
BSNT_02842 664 TCAAAAACGGATAAGATAACGC------------TTTTGAAGCATCACAT 701
|.||||| ||||| ||.|.|||||..|||.
BL03514 668 TAAAAAA----------AACGCAGCGTGTTTCTTTTATTAAGCAATACAC 707
BSNT_02842 702 TTTGA-----AGAACTCTGCGCCTAT------ATCCGATAGAAGTGGGCG 740
..||| |.|| |.||||| |||||
BL03514 708 AGTGATCAATAAAA-----CACCTATTAAAACATCCG------------- 739
BSNT_02842 741 GTTTCCGACTCTTGCAGCTGGCCAGAATCAATTTAGGATTG----CGGGT 786
.|.||||| |.|| ||.||.||.|||||.|| .|..|
BL03514 740 ---GCAGACTC------CCGG---GACTCGATATAGGAATGAATAAGTTT 777
BSNT_02842 787 GCTACCT---ACAGCAATATCCGAT-------TCAT------TACACACT 820
|..|.|| |.|.|||| ||| |||| |||.|..|
BL03514 778 GAAATCTTGAATACCAAT----GATTTTGAAATCATATTTGATACCCGTT 823
BSNT_02842 821 TTTATTA----TAAATAG 834
|.||.|| |||
BL03514 824 TCTACTACGCGTAA---- 837
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