Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02824 and BL03500

See Amino acid alignment / Visit BSNT_02824 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:35
# Commandline: needle
#    -asequence dna-align/BSNT_02824.1.5803.seq
#    -bsequence dna-align/BL03500.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02824-BL03500.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02824-BL03500.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02824
# 2: BL03500
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 626
# Identity:     295/626 (47.1%)
# Similarity:   295/626 (47.1%)
# Gaps:         250/626 (39.9%)
# Score: 554.5
# 
#
#=======================================

BSNT_02824         1 TTGGCGAGAC---GAAAA------------CAATTAACGGAAACGTTAAA     35
                     .||.||||||   .||||            |||||||         ||.|
BL03500            1 ATGCCGAGACCTGCAAAATCCGCAGCCCTTCAATTAA---------TACA     41

BSNT_02824        36 AGG----ACAAATTACCAACGAAGAGCGGGAAGAGCGTCTGCAG-CAGG-     79
                     .||    .|||||.|  ||.|||.|  .|.||||||  .||||| |||| 
BL03500           42 GGGCAATCCAAATAA--AAAGAATA--CGAAAGAGC--TTGCAGCCAGGG     85

BSNT_02824        80 ------AAGAAAAACTCAAAGATTT-----TTCGCCCTTGCAAGAA----    114
                           |.|||||    ||||  ||     |.|||.||     |||    
BL03500           86 CCAAACATGAAAA----AAAG--TTGAAAATGCGCTCT-----GAAAATA    124

BSNT_02824       115 --AAGCCACCATA-CTGGTTGTCCACTATGGCGAAGAATGAAT-------    154
                       ||.||.|| || ||||.||...|...||||.||.||.||||       
BL03500          125 TCAAACCGCC-TACCTGGCTGGATAAGGTGGCTAAAAAAGAATTTAAGCG    173

BSNT_02824       155 ------------------------------------GGCGGCG--TATC-    165
                                                         ||.||||  |||| 
BL03500          174 GATTGCTGCTTTATTATCTGAGGTGGAAATTATGACGGAGGCGGATATCA    223

BSNT_02824       166 ------TACCCGCACATTATCAATTTGCCAATTTCTGAATTAGATTCGAC    209
                           ||.||||..|||.|.|   ||||.| ||||.|.|        ||
BL03500          224 GCATGTTAGCCGCCTATTGTAA---TGCCTA-TTCTCAGT--------AC    261

BSNT_02824       210 ATTGCTTGCGATCTATTGCAACAGCTATGCACAGTATCG-GGAAGCGATG    258
                     |||        ||||||.|||         |.|.|||.| ||||  ||.|
BL03500          262 ATT--------TCTATTACAA---------AAATTATTGAGGAA--GACG    292

BSNT_02824       259 GC----TGAT--ATA------GCCA-------------AAGACGGCCAAG    283
                     ||    ||||  |||      |.||             |||.|||.||||
BL03500          293 GCATCATGATTCATACAGAGGGTCAAGGTGAAAACGGGAAGCCGGTCAAG    342

BSNT_02824       284 TTATG-TTTGAAAAAAACAGCCGGGG-----TGAGACGGTTAAAAAGAAA    327
                     |  || ||.||.||.|.||.||         |||.|||     |.|||||
BL03500          343 T--TGATTGGAGAAGAGCATCC----CCTACTGAAACG-----ACAGAAA    381

BSNT_02824       328 AATCCATCTGTGGATATAATGAA--CAGCATGTCTAAAGAGATCCGGGGC    375
                     ||  |.|||.| |||..||||||  |.|| || ||||.||..||.|...|
BL03500          382 AA--CTTCTAT-GATCAAATGAAATCGGC-TG-CTAATGATTTCGGACTC    426

BSNT_02824       376 ATTGCCGGCCAGCTTGGTCTGTCTCTGGATTCACGTCTACGAA--TCGTC    423
                     |        ||.|   |||||          ||||  |.|.||  ||| |
BL03500          427 A--------CACC---GTCTG----------CACG--TGCCAAGCTCG-C    452

BSNT_02824       424 GGCCTCGACAGCGACAGCGAGGAAGA-----TGATGAGTTT-GGAGCAAT    467
                     |..|.|||     |.|.|.|||||||     .||.||.||| |.||.||.
BL03500          453 GATCACGA-----AAACCCAGGAAGAACGGGAGAAGACTTTAGCAGAAAA    497

BSNT_02824       468 GGCG-------ATAGATGACGATTGA    486
                     ||.|       ||..||||       
BL03500          498 GGAGTTTAGTAATGTATGA-------    516


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