Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02824 and BL03500
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:35
# Commandline: needle
# -asequence dna-align/BSNT_02824.1.5803.seq
# -bsequence dna-align/BL03500.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02824-BL03500.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02824-BL03500.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02824
# 2: BL03500
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 626
# Identity: 295/626 (47.1%)
# Similarity: 295/626 (47.1%)
# Gaps: 250/626 (39.9%)
# Score: 554.5
#
#
#=======================================
BSNT_02824 1 TTGGCGAGAC---GAAAA------------CAATTAACGGAAACGTTAAA 35
.||.|||||| .|||| ||||||| ||.|
BL03500 1 ATGCCGAGACCTGCAAAATCCGCAGCCCTTCAATTAA---------TACA 41
BSNT_02824 36 AGG----ACAAATTACCAACGAAGAGCGGGAAGAGCGTCTGCAG-CAGG- 79
.|| .|||||.| ||.|||.| .|.|||||| .||||| ||||
BL03500 42 GGGCAATCCAAATAA--AAAGAATA--CGAAAGAGC--TTGCAGCCAGGG 85
BSNT_02824 80 ------AAGAAAAACTCAAAGATTT-----TTCGCCCTTGCAAGAA---- 114
|.||||| |||| || |.|||.|| |||
BL03500 86 CCAAACATGAAAA----AAAG--TTGAAAATGCGCTCT-----GAAAATA 124
BSNT_02824 115 --AAGCCACCATA-CTGGTTGTCCACTATGGCGAAGAATGAAT------- 154
||.||.|| || ||||.||...|...||||.||.||.||||
BL03500 125 TCAAACCGCC-TACCTGGCTGGATAAGGTGGCTAAAAAAGAATTTAAGCG 173
BSNT_02824 155 ------------------------------------GGCGGCG--TATC- 165
||.|||| ||||
BL03500 174 GATTGCTGCTTTATTATCTGAGGTGGAAATTATGACGGAGGCGGATATCA 223
BSNT_02824 166 ------TACCCGCACATTATCAATTTGCCAATTTCTGAATTAGATTCGAC 209
||.||||..|||.|.| ||||.| ||||.|.| ||
BL03500 224 GCATGTTAGCCGCCTATTGTAA---TGCCTA-TTCTCAGT--------AC 261
BSNT_02824 210 ATTGCTTGCGATCTATTGCAACAGCTATGCACAGTATCG-GGAAGCGATG 258
||| ||||||.||| |.|.|||.| |||| ||.|
BL03500 262 ATT--------TCTATTACAA---------AAATTATTGAGGAA--GACG 292
BSNT_02824 259 GC----TGAT--ATA------GCCA-------------AAGACGGCCAAG 283
|| |||| ||| |.|| |||.|||.||||
BL03500 293 GCATCATGATTCATACAGAGGGTCAAGGTGAAAACGGGAAGCCGGTCAAG 342
BSNT_02824 284 TTATG-TTTGAAAAAAACAGCCGGGG-----TGAGACGGTTAAAAAGAAA 327
| || ||.||.||.|.||.|| |||.||| |.|||||
BL03500 343 T--TGATTGGAGAAGAGCATCC----CCTACTGAAACG-----ACAGAAA 381
BSNT_02824 328 AATCCATCTGTGGATATAATGAA--CAGCATGTCTAAAGAGATCCGGGGC 375
|| |.|||.| |||..|||||| |.|| || ||||.||..||.|...|
BL03500 382 AA--CTTCTAT-GATCAAATGAAATCGGC-TG-CTAATGATTTCGGACTC 426
BSNT_02824 376 ATTGCCGGCCAGCTTGGTCTGTCTCTGGATTCACGTCTACGAA--TCGTC 423
| ||.| ||||| |||| |.|.|| ||| |
BL03500 427 A--------CACC---GTCTG----------CACG--TGCCAAGCTCG-C 452
BSNT_02824 424 GGCCTCGACAGCGACAGCGAGGAAGA-----TGATGAGTTT-GGAGCAAT 467
|..|.||| |.|.|.||||||| .||.||.||| |.||.||.
BL03500 453 GATCACGA-----AAACCCAGGAAGAACGGGAGAAGACTTTAGCAGAAAA 497
BSNT_02824 468 GGCG-------ATAGATGACGATTGA 486
||.| ||..||||
BL03500 498 GGAGTTTAGTAATGTATGA------- 516
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