Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05135 and BL03463
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:15
# Commandline: needle
# -asequence dna-align/BSNT_05135___cggR.1.5803.seq
# -bsequence dna-align/BL03463___cggR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05135___cggR-BL03463___cggR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05135___cggR-BL03463___cggR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05135___cggR
# 2: BL03463___cggR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1043
# Identity: 744/1043 (71.3%)
# Similarity: 744/1043 (71.3%)
# Gaps: 97/1043 ( 9.3%)
# Score: 2857.0
#
#
#=======================================
BSNT_05135___ 0 -------------------------------------------------- 0
BL03463___cgg 1 ATGAATCAACTAATACAGGCTCAGAAAAAATTATTGCCGGATCTTCTCGA 50
BSNT_05135___ 1 -------------------------TTGCAGTATATCAGGCTGACAGAAC 25
||||||||.||.||||||||.||||
BL03463___cgg 51 TGTCATGCAGAAAAGGTACAAAATTTTGCAGTACATAAGGCTGACTGAAC 100
BSNT_05135___ 26 CCATCGGGCGAAGAAGCCTGTCTGCCAGTCTCGGAATCAGCGAGCGTGTG 75
|.|||||..||||||||||..|||||||.|||||.|||||||||||..|.
BL03463___cgg 101 CGATCGGCAGAAGAAGCCTTGCTGCCAGCCTCGGCATCAGCGAGCGGATT 150
BSNT_05135___ 76 CTGAGGGGCGAGGTTCAGTTTTTAAAGGAACAGAACCTGGTCGATATTAA 125
.|.||||..|||||||||||||||||.|||||.||.||..|.||.|||||
BL03463___cgg 151 TTAAGGGCGGAGGTTCAGTTTTTAAAAGAACAAAATCTACTAGAGATTAA 200
BSNT_05135___ 126 GACAAACGGCATGACATTGACAGAAGAGGGCTATGAACTGCTTTCTGTTT 175
.||||.||||||||.|||||||...||.||.|..||.|||||....|||.
BL03463___cgg 201 AACAACCGGCATGATATTGACACCTGAAGGATCCGACCTGCTGAAAGTTC 250
BSNT_05135___ 176 TGGAAGATACGATGAAAGATGTTTTAGGTTTGACTCTTTTGGAAAAGACA 225
|.||||||||||||||.||.|||||||||||.||||.|||||||||.|||
BL03463___cgg 251 TCGAAGATACGATGAAGGACGTTTTAGGTTTAACTCATTTGGAAAATACA 300
BSNT_05135___ 226 TTAAAAGAACGTTTAAATCTGAAGGATGCCATTATCGTATCCGGAGACAG 275
||||||||..|.||.||.||..|.||.|.|||.||.|||||.||||||||
BL03463___cgg 301 TTAAAAGAGAGGTTGAACCTCGACGAAGTCATCATTGTATCGGGAGACAG 350
BSNT_05135___ 276 CGATCAATCCCCATGGGTCAAAAAAGAAATGGGAAGAGCGGCTGTCGCAT 325
|||.||.||||||||||||||||||||.|||||.||||||||.|||||||
BL03463___cgg 351 CGACCAGTCCCCATGGGTCAAAAAAGAGATGGGGAGAGCGGCCGTCGCAT 400
BSNT_05135___ 326 GTATGAAAAAAAGATTTTCAGGCAAAAATATCGTCGCTGTAACTGGCGGT 375
|.||||||||.||.|||.|.||..|||||||||||||.|||||.||.|||
BL03463___cgg 401 GCATGAAAAATAGGTTTACGGGGGAAAATATCGTCGCCGTAACCGGAGGT 450
BSNT_05135___ 376 ACGACAATTGAAGCTGTCGCCGAAATGATGACGCCGGATTCTAAAAACCG 425
||||||.||||.||.||.||.||||||||||||||.||.||.||||||||
BL03463___cgg 451 ACGACACTTGAGGCCGTGGCAGAAATGATGACGCCTGACTCGAAAAACCG 500
BSNT_05135___ 426 CGAGCTTTTGTTTGTGCCTGCAAGAGGCGGTTTAGGCGAAGACGTGAAAA 475
|.||||..|.|||||.||.|||||||||||..|.||||||.||||.|..|
BL03463___cgg 501 CAAGCTGCTTTTTGTTCCGGCAAGAGGCGGACTGGGCGAAAACGTCAGGA 550
BSNT_05135___ 476 ACCAGGCGAACACCATATGCGCGCATATGGCGGAGAAGGCTTCAGGCACT 525
|.|||||.||.||.||.|||||.||||||||.|||||.|||||.||.||.
BL03463___cgg 551 ATCAGGCCAATACGATTTGCGCCCATATGGCCGAGAAAGCTTCCGGTACA 600
BSNT_05135___ 526 TACCGGCTTTTGTTTGTTCCGGGACAGCTG-TCACAAGGCGCCTATTCAT 574
|||...||.||.|||||.|||||.|||||| .|| |||..||.|||||.|
BL03463___cgg 601 TACAAACTGTTATTTGTGCCGGGGCAGCTGAGCA-AAGAAGCATATTCTT 649
BSNT_05135___ 575 CTATTATTGAAGAGCCTTCTGTCAAAGAGGTGCTGAACACCATTAAATCA 624
||||.|||||.||.||||||.|.|||||.|||||..|.||.|||.|||||
BL03463___cgg 650 CTATCATTGAGGAACCTTCTATTAAAGAAGTGCTTCAGACGATTCAATCA 699
BSNT_05135___ 625 GCGAGTATGCTGGTTCACGGAATCGGCGAAGCTAAAACTATGGCTCAGCG 674
.|.||||||.||.||||.||||||||.||.||||||||.|||||..|.||
BL03463___cgg 700 TCCAGTATGGTGATTCATGGAATCGGGGATGCTAAAACAATGGCAGAACG 749
BSNT_05135___ 675 CAGAAACACGACTTTAGAAGACTTAAAGAAAATAGATGATAACGACGCGG 724
.|||||.|||.|....|||||.||.|||||||||||.||.||.||.||.|
BL03463___cgg 750 AAGAAATACGCCAAAGGAAGATTTGAAGAAAATAGAAGAAAATGAGGCAG 799
BSNT_05135___ 725 TGACAGAAGCGTTCGGCTACTATTTTAACGCG-GACGGCGAAGTGGTTCA 773
|..||||||||||||||||||||||..|| || .||||.|||||..||||
BL03463___cgg 800 TTGCAGAAGCGTTCGGCTACTATTTCGAC-CGCCACGGGGAAGTCATTCA 848
BSNT_05135___ 774 CAAAGTGCATTCTGTCGGAATGCAGCTGGATGACATAGACGCCATCCCCG 823
|||||||||....||.||.||.|||||.||.||..|.||..|.|||||..
BL03463___cgg 849 CAAAGTGCACAGCGTAGGCATCCAGCTTGAGGATCTCGATTCGATCCCGA 898
BSNT_05135___ 824 ATATTATTGCGGTAGCGGGCGGATCATCAAAAGCCGAGGCGATCGAGGCT 873
|.||.||||||||.|||||.||.||.||||||||.||.||.||.|||||.
BL03463___cgg 899 ACATCATTGCGGTGGCGGGAGGCTCGTCAAAAGCTGACGCCATAGAGGCA 948
BSNT_05135___ 874 TACTTTAAAAAGCCACGCAACACGGTTCTCGTCACAGACGAAGGAGCCGC 923
|||||.||||||||.|||||.||||||.|..||||.||.|||||||||||
BL03463___cgg 949 TACTTCAAAAAGCCGCGCAATACGGTTTTGATCACTGATGAAGGAGCCGC 998
BSNT_05135___ 924 AAAGAAGTTATTAAGGGA-----------TGAATAA------- 948
|||..||||||||||||| |.||||.
BL03463___cgg 999 AAAACAGTTATTAAGGGAAGCTTCTTCCCTCAATATAAATTAA 1041
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