Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05170 and BL03454

See Amino acid alignment / Visit BSNT_05170 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:17
# Commandline: needle
#    -asequence dna-align/BSNT_05170___sigL.1.5803.seq
#    -bsequence dna-align/BL03454___sigL.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05170___sigL-BL03454___sigL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05170___sigL-BL03454___sigL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05170___sigL
# 2: BL03454___sigL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1441
# Identity:     861/1441 (59.8%)
# Similarity:   861/1441 (59.8%)
# Gaps:         257/1441 (17.8%)
# Score: 2243.0
# 
#
#=======================================

BSNT_05170___      1 ATGATGGATATGAAACTTCAGCAAGTACA-----AGTA----TTAAAGCC     41
                              ||| |||||  |||.|||||     ||.|    ..|||.|.
BL03454___sig      1 ---------ATG-AACTT--GCATGTACAGCAGCAGCAAACGGCAAAACT     38

BSNT_05170___     42 TCAACTGACACAGGAGCTCAGGCAGGCCA-TCACGCTGCTTGGCTATCAT     90
                     |||..||||.||.|.|||....||.|||| ||| ..|||||...|||...
BL03454___sig     39 TCACTTGACGCAAGGGCTTGCCCAAGCCATTCA-TATGCTTCAGTATTCG     87

BSNT_05170___     91 TCGGCAGAACT----CGCCGAGTACATTGATGAGCTCTCACTGGAAAACC    136
                     |||||.||.||    .||||    .||||||||.||||||.|||||||||
BL03454___sig     88 TCGGCCGAGCTGAACAGCCG----GATTGATGAACTCTCATTGGAAAACC    133

BSNT_05170___    137 CTCTTATTGAACGAAAGGAAACAGACACACCGCCACTATCTTACCATAAA    186
                     |.||.||.||||||||.||..|.||.|..||.|.|..||.||||||||||
BL03454___sig    134 CCCTGATCGAACGAAAAGACTCCGATATTCCCCGATCATTTTACCATAAA    183

BSNT_05170___    187 ACAAA----------CAAAAACAGGATGAAT-----GCACAGGAAG-CGG    220
                     ||.||          |||||  .|.|.||||     ||.|.|  || |||
BL03454___sig    184 ACGAATCGTCATTTGCAAAA--TGAAGGAATAAGCCGCTCTG--AGACGG    229

BSNT_05170___    221 GCCTTCAATT------AAGTAATCCGCAAAAAACATTGCAGGATGCGTTA    264
                     .||    |||      |||  ||  |..||||.|          ||.||.
BL03454___sig    230 CCC----ATTCCCGTGAAG--AT--GTTAAAAGC----------GCTTTG    261

BSNT_05170___    265 AAACAGCAGTCACTCGATATGAATCTGACCAACACTGAAAAAAAGATTTT    314
                     ||||.||||.|.||||||.|..|.|||.|.|.|...|||||...|.||||
BL03454___sig    262 AAACGGCAGGCGCTCGATCTCCAGCTGTCAAGCCGCGAAAAGCGGGTTTT    311

BSNT_05170___    315 TAATTATCTGATTCATTCGCTTGATTCAAACGGGTACTTGGAAGAAGATG    364
                     .|..|||.||.|..|.||.||||||.|||||||.||..||..|||||   
BL03454___sig    312 CAGCTATTTGGTCGAATCACTTGATCCAAACGGATATGTGACAGAAG---    358

BSNT_05170___    365 TGGAGGAGGCAGCACGGCGCCTATCTGTATC-----------GGCT----    399
                                  ||..|||    ||.||||           ||||    
BL03454___sig    359 -------------ACATCGC----CTTTATCGCTTCCGAGCTGGCTGTCA    391

BSNT_05170___    400 ------AAGGAAACGGAGGCTGTTTTGGCAAAACTCCAGTCGTTAGAACC    443
                           || |||.|.||.|..||.||||..||.||.|||.|..|.||.||
BL03454___sig    392 CCAGAGAA-GAAGCTGAAGAAGTCTTGGGCAAGCTGCAGACTCTTGATCC    440

BSNT_05170___    444 GGCTGGAATCGGCGCGAGATCTTTGCAGGAATGCATCCTTCTTCAATTAC    493
                     |||.||.|||||.|||.|.||..|.||||||||||||||..|.||||||.
BL03454___sig    441 GGCAGGCATCGGGGCGCGGTCGCTACAGGAATGCATCCTGATCCAATTAA    490

BSNT_05170___    494 AGCGGCTGCCGA-----ACAGAAATGAACAAGCGGAAATGCTGGTTTCAG    538
                     ||||.|||||.|     ||.|.||     |||||||||...|..||||  
BL03454___sig    491 AGCGTCTGCCCAAGGAGACGGCAA-----AAGCGGAAAAAGTCATTTC--    533

BSNT_05170___    539 CTCAT--TTTGA--TGCTTTTGCACAAAAA-AAATGGAAAGCGCTTTCAG    583
                     |||||  |||||  ||  ||||| |||||| ..||||||||.|||.||||
BL03454___sig    534 CTCATACTTTGACCTG--TTTGC-CAAAAAGGGATGGAAAGAGCTGTCAG    580

BSNT_05170___    584 TGGAGA-CAGGAATTCCGC-TTCATA-CT-------ATTCAAGA---TAT    620
                      .|||| |.||..||.||| ||||.| ||       ||||||||   |.|
BL03454___sig    581 -AGAGAGCGGGGCTTTCGCTTTCAGAGCTTCAGGACATTCAAGACCTTGT    629

BSNT_05170___    621 CTCAGA--TGATATCGCGGCTCTTCATCCTAGACCTGGCCTTCTGTTTGC    668
                     |.||||  ||   ||||.||           |.||.||..|..|.|.|  
BL03454___sig    630 CGCAGAACTG---TCGCCGC-----------GTCCCGGATTGATATAT--    663

BSNT_05170___    669 CCGGC-CAGA-----GCAAGATGTGTATATTGAGCCTGATATTTTTATCA    712
                       ||| ||||     ||  ||.||.|||.|.||||||||   |||.||||
BL03454___sig    664 --GGCACAGATGATGGC--GAAGTCTATGTCGAGCCTGA---TTTAATCA    706

BSNT_05170___    713 ---CCGTAAAAAACGGGCACATTGCAGC-GGAACTGAATACCCGCTCGTT    758
                        |.|.|.|..| .||.|.||||..|| .||.||.|..|.|||.||.||
BL03454___sig    707 TTTCAGCAGAGGA-TGGAAAATTGGTGCTTGAGCTCAGCAGCCGTTCTTT    755

BSNT_05170___    759 TCCCGAGATCGATCTGCATCCGCAGTACAGAACGC-TTTTATCATCCG--    805
                     ||||||.|||.|.||              .||||| |||||..|.|||  
BL03454___sig    756 TCCCGACATCCAGCT--------------TAACGCGTTTTACGAGCCGTT    791

BSNT_05170___    806 ------GCTCCTGTC--------AGGATACTGTCTCCTATTTATCTGCGA    841
                           ||..|.|||        |||..||   |.|.|||.|.||||..|
BL03454___sig    792 TTTAGAGCGTCAGTCAAAAGACGAGGCGAC---CGCTTATATCTCTGATA    838

BSNT_05170___    842 AATATC-AGGAGTGGCGCTGGCT-GA----GCCGCGCGCTGCGGCAGCGA    885
                     |.| || ||.|||||...||||| ||    |||     ||..||||   |
BL03454___sig    839 AGT-TCAAGCAGTGGAAATGGCTCGACAATGCC-----CTCAGGCA---A    879

BSNT_05170___    886 AAAC---AGACAATCACGAGAATTATCAATGAACTGATCACACGCCAAAA    932
                     |.||   |.||.||...|||..|.||....|||.|.||....||.|||||
BL03454___sig    880 AGACGGGAAACGATGCGGAGGGTGATGGCGGAAATCATGGTGCGGCAAAA    929

BSNT_05170___    933 GGATTTCTTTCTGAAAGGGCGAAG-CGCAATGAAGCCGCTGACTCTCAGA    981
                     .||||..|||.|.|||||| .||| ||.|.||||||||||.||..|.|.|
BL03454___sig    930 AGATTATTTTTTAAAAGGG-AAAGACGAACTGAAGCCGCTCACATTAAAA    978

BSNT_05170___    982 GAGGTGGCGGACTG-TCTAAGCCTTCATGAATCAACTGTGAGCCGGGCCA   1030
                     |||.|.||.|| || .||..||.||||.||||||||.||.|||||.||..
BL03454___sig    979 GAGATCGCTGA-TGCCCTCGGCGTTCACGAATCAACGGTAAGCCGCGCAG   1027

BSNT_05170___   1031 TTAAAGGGAAAACAATACAAACGCCTTACGGGCTGTTTGAGATGAAACTC   1080
                     |.||||||||||...|.||.|||||||..|.|||.|..|||.|.||||..
BL03454___sig   1028 TCAAAGGGAAAATCGTGCAGACGCCTTTTGAGCTTTGCGAGCTTAAACGG   1077

BSNT_05170___   1081 TTTTTCTCAGCAAAAGCCGAGGCTTCAGGTGATGGAGATGCGTCGAATTA   1130
                     |||||.||.||.||.|...|||...|.|.|||.||..|||||||.|.|.|
BL03454___sig   1078 TTTTTTTCGGCGAAGGTAAAGGACGCCGCTGACGGGCATGCGTCAAGTCA   1127

BSNT_05170___   1131 TGCAGTCAAAACGCATCTGGAAAAC-----CTGATCAATCAAGAGGACAA   1175
                     ..||||||||.||||||||     |     ||||||.||.||||.||.||
BL03454___sig   1128 CACAGTCAAAGCGCATCTG-----CGCCGGCTGATCGATGAAGAAGATAA   1172

BSNT_05170___   1176 AACAAAACCGCTTTCAGACCAAAAGCTTGTCGA--TTTGCTGTATGAACA   1223
                     ||..||||||||||||||.||.||.||.|.|||  |||  |..|.|||.|
BL03454___sig   1173 AATGAAACCGCTTTCAGATCAGAAACTGGCCGACCTTT--TAAACGAAAA   1220

BSNT_05170___   1224 ACATGGCATCCAAATCTCGAGACGCACCGTGGCAAAATATCGCGACCAAA   1273
                     .||.|||.|....||.|||||.||.|||||.||.|||||.||.||.||..
BL03454___sig   1221 GCACGGCGTTGTCATATCGAGGCGGACCGTCGCCAAATACCGTGATCAGC   1270

BSNT_05170___   1274 TGAATATTCCGTCATCGGCAGCGAGAAAGCGATATAAATAA   1314
                     |.|||||.|.|.|.|||.|.|..||||||.|||||.|||||
BL03454___sig   1271 TCAATATACTGCCTTCGTCTGTAAGAAAGAGATATCAATAA   1311


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