Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05170 and BL03454
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:17
# Commandline: needle
# -asequence dna-align/BSNT_05170___sigL.1.5803.seq
# -bsequence dna-align/BL03454___sigL.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05170___sigL-BL03454___sigL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05170___sigL-BL03454___sigL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05170___sigL
# 2: BL03454___sigL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1441
# Identity: 861/1441 (59.8%)
# Similarity: 861/1441 (59.8%)
# Gaps: 257/1441 (17.8%)
# Score: 2243.0
#
#
#=======================================
BSNT_05170___ 1 ATGATGGATATGAAACTTCAGCAAGTACA-----AGTA----TTAAAGCC 41
||| ||||| |||.||||| ||.| ..|||.|.
BL03454___sig 1 ---------ATG-AACTT--GCATGTACAGCAGCAGCAAACGGCAAAACT 38
BSNT_05170___ 42 TCAACTGACACAGGAGCTCAGGCAGGCCA-TCACGCTGCTTGGCTATCAT 90
|||..||||.||.|.|||....||.|||| ||| ..|||||...|||...
BL03454___sig 39 TCACTTGACGCAAGGGCTTGCCCAAGCCATTCA-TATGCTTCAGTATTCG 87
BSNT_05170___ 91 TCGGCAGAACT----CGCCGAGTACATTGATGAGCTCTCACTGGAAAACC 136
|||||.||.|| .|||| .||||||||.||||||.|||||||||
BL03454___sig 88 TCGGCCGAGCTGAACAGCCG----GATTGATGAACTCTCATTGGAAAACC 133
BSNT_05170___ 137 CTCTTATTGAACGAAAGGAAACAGACACACCGCCACTATCTTACCATAAA 186
|.||.||.||||||||.||..|.||.|..||.|.|..||.||||||||||
BL03454___sig 134 CCCTGATCGAACGAAAAGACTCCGATATTCCCCGATCATTTTACCATAAA 183
BSNT_05170___ 187 ACAAA----------CAAAAACAGGATGAAT-----GCACAGGAAG-CGG 220
||.|| ||||| .|.|.|||| ||.|.| || |||
BL03454___sig 184 ACGAATCGTCATTTGCAAAA--TGAAGGAATAAGCCGCTCTG--AGACGG 229
BSNT_05170___ 221 GCCTTCAATT------AAGTAATCCGCAAAAAACATTGCAGGATGCGTTA 264
.|| ||| ||| || |..||||.| ||.||.
BL03454___sig 230 CCC----ATTCCCGTGAAG--AT--GTTAAAAGC----------GCTTTG 261
BSNT_05170___ 265 AAACAGCAGTCACTCGATATGAATCTGACCAACACTGAAAAAAAGATTTT 314
||||.||||.|.||||||.|..|.|||.|.|.|...|||||...|.||||
BL03454___sig 262 AAACGGCAGGCGCTCGATCTCCAGCTGTCAAGCCGCGAAAAGCGGGTTTT 311
BSNT_05170___ 315 TAATTATCTGATTCATTCGCTTGATTCAAACGGGTACTTGGAAGAAGATG 364
.|..|||.||.|..|.||.||||||.|||||||.||..||..|||||
BL03454___sig 312 CAGCTATTTGGTCGAATCACTTGATCCAAACGGATATGTGACAGAAG--- 358
BSNT_05170___ 365 TGGAGGAGGCAGCACGGCGCCTATCTGTATC-----------GGCT---- 399
||..||| ||.|||| ||||
BL03454___sig 359 -------------ACATCGC----CTTTATCGCTTCCGAGCTGGCTGTCA 391
BSNT_05170___ 400 ------AAGGAAACGGAGGCTGTTTTGGCAAAACTCCAGTCGTTAGAACC 443
|| |||.|.||.|..||.||||..||.||.|||.|..|.||.||
BL03454___sig 392 CCAGAGAA-GAAGCTGAAGAAGTCTTGGGCAAGCTGCAGACTCTTGATCC 440
BSNT_05170___ 444 GGCTGGAATCGGCGCGAGATCTTTGCAGGAATGCATCCTTCTTCAATTAC 493
|||.||.|||||.|||.|.||..|.||||||||||||||..|.||||||.
BL03454___sig 441 GGCAGGCATCGGGGCGCGGTCGCTACAGGAATGCATCCTGATCCAATTAA 490
BSNT_05170___ 494 AGCGGCTGCCGA-----ACAGAAATGAACAAGCGGAAATGCTGGTTTCAG 538
||||.|||||.| ||.|.|| |||||||||...|..||||
BL03454___sig 491 AGCGTCTGCCCAAGGAGACGGCAA-----AAGCGGAAAAAGTCATTTC-- 533
BSNT_05170___ 539 CTCAT--TTTGA--TGCTTTTGCACAAAAA-AAATGGAAAGCGCTTTCAG 583
||||| ||||| || ||||| |||||| ..||||||||.|||.||||
BL03454___sig 534 CTCATACTTTGACCTG--TTTGC-CAAAAAGGGATGGAAAGAGCTGTCAG 580
BSNT_05170___ 584 TGGAGA-CAGGAATTCCGC-TTCATA-CT-------ATTCAAGA---TAT 620
.|||| |.||..||.||| ||||.| || |||||||| |.|
BL03454___sig 581 -AGAGAGCGGGGCTTTCGCTTTCAGAGCTTCAGGACATTCAAGACCTTGT 629
BSNT_05170___ 621 CTCAGA--TGATATCGCGGCTCTTCATCCTAGACCTGGCCTTCTGTTTGC 668
|.|||| || ||||.|| |.||.||..|..|.|.|
BL03454___sig 630 CGCAGAACTG---TCGCCGC-----------GTCCCGGATTGATATAT-- 663
BSNT_05170___ 669 CCGGC-CAGA-----GCAAGATGTGTATATTGAGCCTGATATTTTTATCA 712
||| |||| || ||.||.|||.|.|||||||| |||.||||
BL03454___sig 664 --GGCACAGATGATGGC--GAAGTCTATGTCGAGCCTGA---TTTAATCA 706
BSNT_05170___ 713 ---CCGTAAAAAACGGGCACATTGCAGC-GGAACTGAATACCCGCTCGTT 758
|.|.|.|..| .||.|.||||..|| .||.||.|..|.|||.||.||
BL03454___sig 707 TTTCAGCAGAGGA-TGGAAAATTGGTGCTTGAGCTCAGCAGCCGTTCTTT 755
BSNT_05170___ 759 TCCCGAGATCGATCTGCATCCGCAGTACAGAACGC-TTTTATCATCCG-- 805
||||||.|||.|.|| .||||| |||||..|.|||
BL03454___sig 756 TCCCGACATCCAGCT--------------TAACGCGTTTTACGAGCCGTT 791
BSNT_05170___ 806 ------GCTCCTGTC--------AGGATACTGTCTCCTATTTATCTGCGA 841
||..|.||| |||..|| |.|.|||.|.||||..|
BL03454___sig 792 TTTAGAGCGTCAGTCAAAAGACGAGGCGAC---CGCTTATATCTCTGATA 838
BSNT_05170___ 842 AATATC-AGGAGTGGCGCTGGCT-GA----GCCGCGCGCTGCGGCAGCGA 885
|.| || ||.|||||...||||| || ||| ||..|||| |
BL03454___sig 839 AGT-TCAAGCAGTGGAAATGGCTCGACAATGCC-----CTCAGGCA---A 879
BSNT_05170___ 886 AAAC---AGACAATCACGAGAATTATCAATGAACTGATCACACGCCAAAA 932
|.|| |.||.||...|||..|.||....|||.|.||....||.|||||
BL03454___sig 880 AGACGGGAAACGATGCGGAGGGTGATGGCGGAAATCATGGTGCGGCAAAA 929
BSNT_05170___ 933 GGATTTCTTTCTGAAAGGGCGAAG-CGCAATGAAGCCGCTGACTCTCAGA 981
.||||..|||.|.|||||| .||| ||.|.||||||||||.||..|.|.|
BL03454___sig 930 AGATTATTTTTTAAAAGGG-AAAGACGAACTGAAGCCGCTCACATTAAAA 978
BSNT_05170___ 982 GAGGTGGCGGACTG-TCTAAGCCTTCATGAATCAACTGTGAGCCGGGCCA 1030
|||.|.||.|| || .||..||.||||.||||||||.||.|||||.||..
BL03454___sig 979 GAGATCGCTGA-TGCCCTCGGCGTTCACGAATCAACGGTAAGCCGCGCAG 1027
BSNT_05170___ 1031 TTAAAGGGAAAACAATACAAACGCCTTACGGGCTGTTTGAGATGAAACTC 1080
|.||||||||||...|.||.|||||||..|.|||.|..|||.|.||||..
BL03454___sig 1028 TCAAAGGGAAAATCGTGCAGACGCCTTTTGAGCTTTGCGAGCTTAAACGG 1077
BSNT_05170___ 1081 TTTTTCTCAGCAAAAGCCGAGGCTTCAGGTGATGGAGATGCGTCGAATTA 1130
|||||.||.||.||.|...|||...|.|.|||.||..|||||||.|.|.|
BL03454___sig 1078 TTTTTTTCGGCGAAGGTAAAGGACGCCGCTGACGGGCATGCGTCAAGTCA 1127
BSNT_05170___ 1131 TGCAGTCAAAACGCATCTGGAAAAC-----CTGATCAATCAAGAGGACAA 1175
..||||||||.|||||||| | ||||||.||.||||.||.||
BL03454___sig 1128 CACAGTCAAAGCGCATCTG-----CGCCGGCTGATCGATGAAGAAGATAA 1172
BSNT_05170___ 1176 AACAAAACCGCTTTCAGACCAAAAGCTTGTCGA--TTTGCTGTATGAACA 1223
||..||||||||||||||.||.||.||.|.||| ||| |..|.|||.|
BL03454___sig 1173 AATGAAACCGCTTTCAGATCAGAAACTGGCCGACCTTT--TAAACGAAAA 1220
BSNT_05170___ 1224 ACATGGCATCCAAATCTCGAGACGCACCGTGGCAAAATATCGCGACCAAA 1273
.||.|||.|....||.|||||.||.|||||.||.|||||.||.||.||..
BL03454___sig 1221 GCACGGCGTTGTCATATCGAGGCGGACCGTCGCCAAATACCGTGATCAGC 1270
BSNT_05170___ 1274 TGAATATTCCGTCATCGGCAGCGAGAAAGCGATATAAATAA 1314
|.|||||.|.|.|.|||.|.|..||||||.|||||.|||||
BL03454___sig 1271 TCAATATACTGCCTTCGTCTGTAAGAAAGAGATATCAATAA 1311
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