Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05179 and BL03448
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:18
# Commandline: needle
# -asequence dna-align/BSNT_05179.1.5803.seq
# -bsequence dna-align/BL03448.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05179-BL03448.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05179-BL03448.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05179
# 2: BL03448
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1646
# Identity: 999/1646 (60.7%)
# Similarity: 999/1646 (60.7%)
# Gaps: 295/1646 (17.9%)
# Score: 2909.0
#
#
#=======================================
BSNT_05179 0 -------------------------------------------------- 0
BL03448 1 TTGAATAAGACATTTGTTTTGAATCTCGGCGCCAATATGGCGTCTTTTTT 50
BSNT_05179 1 -------------------------ATGACGCCTTTTATTGTCAAAACGC 25
.|||||||||...|..||||.||.|
BL03448 51 ATTATCGGTGCTGTTTTCGATGTGGCTGACGCCTTACGTCATCAAGACCC 100
BSNT_05179 26 TCGGTGTGGAAGCGTTTGGCTTTGTTCA-CTTGACACAAAATGTGATTAA 74
|||||||.||.||||||||.|||||.|| ||| |||||.|||.||||.||
BL03448 101 TCGGTGTTGAGGCGTTTGGATTTGTCCATCTT-ACACAGAATATGATCAA 149
BSNT_05179 75 TTACTTTTCGGTTATTACCGTGGCGCTCAGCTCGGTTGTCGTTCGGTTCT 124
||||||||||.|.|||||.||.||.||.|||.||||.||.||.|||||.|
BL03448 150 TTACTTTTCGATAATTACGGTCGCCCTGAGCGCGGTCGTTGTCCGGTTTT 199
BSNT_05179 125 TTTCTGTTGCTGCCCACAGGGGAGAGCGGGAGAAAGC-AAATGCGTATAT 173
||||||||.|.|||||||||||||.||..||..|||| |.|.|| |||||
BL03448 200 TTTCTGTTTCCGCCCACAGGGGAGCGCTTGATGAAGCGAGAGGC-TATAT 248
BSNT_05179 174 CAGCAATTATTTAGCGGCCTCTGTTTTGATTTCATTGCTGC--------- 214
.|..|..|||.|.| |||.| |||.||.|||
BL03448 249 GAATACCTATATCG----------TTTCA--TCACTGGTGCTTTCAGTCA 286
BSNT_05179 215 TCTTG---CTGCCGCTTGCGGGTTCGGCTTTTTTTATTGA---------C 252
||||| .|.|||||.|..||..|||..||||||||.|| .
BL03448 287 TCTTGTTTTTTCCGCTCGGCGGCACGGTGTTTTTTATCGATCAGATCATT 336
BSNT_05179 253 CGCGTCATGAATGTGCCGCAAGCG--CTTTTGGCAGATGTGC-GTTTGTC 299
||||| |.|||| || |||||||..||||||| |.|.| |
BL03448 337 CGCGT--------TCCCGC---CGGTCTTTTGGGGGATGTGCAGGTCG-C 374
BSNT_05179 300 GATTTTAATCGGCAGTTTGCTGTTTATTTTAACGTTTCTGATGGCGGGTT 349
|.||||.||||||||..||||||||.|.||.||.|||.|||||.||||.|
BL03448 375 GCTTTTGATCGGCAGCCTGCTGTTTTTATTGACCTTTGTGATGTCGGGGT 424
BSNT_05179 350 TCGGTGCTGCACCATTTTATGCCAACCGCCTTTATATCACCAGTTCCATT 399
|.|..||.|..||.||||..|||||.....|.|||||.||.||..|.||.
BL03448 425 TTGCCGCCGGTCCGTTTTTCGCCAATAAAATCTATATTACGAGCACGATC 474
BSNT_05179 400 CAGGCGGTGCAAATGCTTATACGGGTGCTGTCTGTGC----TGCTCCTGT 445
||.||..|.||||||||.||.||.|| ||||.|| ||.|..|.|
BL03448 475 CAAGCCATCCAAATGCTGATTCGCGT----TCTGAGCGTATTGTTGATTT 520
BSNT_05179 446 TTGCATGCTTTGCGCCGAAAATCTGGCAGATCCAGCTTGCAGCTTT---- 491
|.||.||.|||||.|||||.||||||||.||.|||||.||.|||.|
BL03448 521 TCGCGTGGTTTGCACCGAAGATCTGGCACATTCAGCTCGCCGCTCTCATC 570
BSNT_05179 492 -----AGCT--GGTGCTGTTATTGCGTCTGTGCTGTCTTTCTATTTCTTC 534
.||| ||.| |||.|| |||||..|||.||||||.
BL03448 571 GCAACCGCTTCGGCG-------TGCATC----CTGTCGATCTTTTTCTTT 609
BSNT_05179 535 AAAAAGCTGATTCCGTGGTTTTCGTTTCGTATGAAGGATCTTTCATTCCG 584
||.|...|||||||.||||||.||||.||..|||.||||.|.||.|| .|
BL03448 610 AAGAGATTGATTCCATGGTTTACGTTCCGGGTGAGGGATATGTCGTT-TG 658
BSNT_05179 585 CACTA---GCAAGGAGCTGTTTCAAGCGGGCGCATGGAGCTCCGTCAATC 631
|| | ||||..|.|||.||||.|||||.|.||||||||||||||..|
BL03448 659 CA--AAGTGCAAAAAACTGCTTCAGGCGGGAGGATGGAGCTCCGTCAGCC 706
BSNT_05179 632 AAATCGGCGTCCTGCTTTTTTTGCAGATTGATCTGTTAA---CCGCCAAT 678
||.|||||.|||||||.|||.||||.||.||| |||| ..||.|||
BL03448 707 AAGTCGGCATCCTGCTGTTTCTGCAAATCGAT---TTAATGGTGGCGAAT 753
BSNT_05179 679 TTGATGCTTGGGGCGTCCGCATCCGGGAAATACGCGGCGATTATCCAGTT 728
.|||||||.||||..||||.||||||.|..|||||||||||.||.|||||
BL03448 754 GTGATGCTGGGGGTTTCCGAATCCGGCATGTACGCGGCGATCATTCAGTT 803
BSNT_05179 729 TCCGCTGCTTTTGCGCA-GCTTGGCCGGAACGGTCGCATCCCTGTTTGCG 777
|||||||.|.|||||.| |||| .|.||||||.|.||..||.|.|||.|.
BL03448 804 TCCGCTGTTGTTGCGGACGCTT-TCGGGAACGCTAGCGGCCGTATTTTCA 852
BSNT_05179 778 CCCATCATGAC-TTCATATTATTCAAAAGGCGATATGGAAGGATTGATGA 826
||.|..||.|| .|| |||||||||||||||||.|..|||||..|..|..
BL03448 853 CCTACGATTACACTC-TATTATTCAAAAGGCGACAAAGAAGGGCTCGTCC 901
BSNT_05179 827 ATTACGCCAATAAGGCAGTAAGGCTCAATGGTCTTTTGCTTGCACTTCCT 876
.|||.||||||.||||.||.|||.|.||.||..|..||||.||..|.||.
BL03448 902 GTTATGCCAATCAGGCCGTCAGGTTTAACGGCATCCTGCTCGCTTTGCCG 951
BSNT_05179 877 GCTGC-CTTATTGGGCGGATTGGCGGGACCTTTTCTGACAATCTGGCTCG 925
||.|| |||.|.|||.||.|| ||.||.||.||||||.|..|.|||||||
BL03448 952 GCGGCGCTTCTGGGGGGGCTT-GCCGGCCCGTTTCTGTCGCTTTGGCTCG 1000
BSNT_05179 926 GACCGTC-------CTTTTCAACGATAGCACCGCTTTTATTTATTCATGC 968
|.||.|| |.|||.|| |..|||.|||.|.||.|||||
BL03448 1001 GCCCTTCATTCGAACATTTGAA-------ATGGCTCTTACTGATACATGC 1043
BSNT_05179 969 CGGATACTTGGTTG------TCAGCCTCGCCTTTATGCCGCTGTTTTATA 1012
.||.||.||||||| |.||||..|| ||||||||||||.|
BL03448 1044 GGGCTATTTGGTTGTTTCATTAAGCCCGGC------GCCGCTGTTTTACA 1087
BSNT_05179 1013 TATGGACCGCTTTTAATCAA-CAAAAAACACCGGCG------ATTGTTAC 1055
|.|..|||||.|.||| ||| |..|.|||||||||| |..|||.|
BL03448 1088 TCTTTACCGCCTATAA-CAAGCTGAGAACACCGGCGCTGACCACGGTTGC 1136
BSNT_05179 1056 CCTGCTGTTAGGTGCGGTGAATGTGGTGCTGGCGGTCACGCTGAGCGGGC 1105
| ||.||.|..||.|||.||.||||.||..||..|||||||||.|
BL03448 1137 C------TTCGGCGTTGTCAATTTGCTGCTTGCCATCGTGCTGAGCGGCC 1180
BSNT_05179 1106 CGGCTCATCTCGGTCTGTACGGCATAACATTGGCAGGGGC--CA--TTT- 1150
||||....|||||.||.|||||.||..|..||||.||.|| || |||
BL03448 1181 CGGCGGGACTCGGCCTTTACGGAATTGCGCTGGCCGGTGCGGCAGCTTTA 1230
BSNT_05179 1151 -CTCTTATTTTAAAAAATGCCATCTTTACGCCGCTTTACGTATCCCGCAT 1199
|.| |.|||||.|.|.||||.||.|||.||||.|.|||....||
BL03448 1231 ACGC------TGAAAAACGTCGTCTTCACTCCGATTTATGCATCAAAGAT 1274
BSNT_05179 1200 TACAGGCT---ACAAAAAGCACGTGTTCTTTAAAGGCATCAT-CGGGCTT 1245
||| ||.| |.|||||| .||.||.|.||||||||| || |||||..
BL03448 1275 TAC-GGGTGAAAGAAAAAG--GGTCTTTTATAAAGGCAT-ATACGGGCCG 1320
BSNT_05179 1246 CTTTCAGCCGCTGTATTTGCCTGGGCGGTCTGTAAGGCAATTCAGTTCGT 1295
.||.|.|.||||..||||.|.|.|||.||||||.|.||..||||.|.|.|
BL03448 1321 GTTGCCGGCGCTTCATTTACTTTGGCTGTCTGTTACGCTCTTCAATACTT 1370
BSNT_05179 1296 TGTGAAGATTGACAGCTGGCCGTCATTGATAGCGACGGGAGTGACAGTCA 1345
..|...|||.|.||||..||.|||.|||.|.|..||||.|.||.|.| |.
BL03448 1371 ATTTTCGATCGTCAGCCTGCTGTCTTTGTTTGTCACGGCACTGGCTG-CG 1419
BSNT_05179 1346 GCTTTTGC-TACG--CTGTTTTCGCTTTTATGCTCGT----TTGTACAAA 1388
.|.||.|| |||| ||||||.| ||.|| |||| ||| ||.||
BL03448 1420 ACGTTGGCTTACGGCCTGTTTGC-CTATT----TCGTCATGTTG-ACGAA 1463
BSNT_05179 1389 AGAGGAAAGAC---------------AGCTGGTATTAAAACGGT------ 1417
||.||||.|.| |||||..|..|.|.||||
BL03448 1464 AGCGGAACGGCGCATTGTCACAACGAAGCTGCAAGCATACCGGTGTTCTC 1513
BSNT_05179 1418 -----TTCGAAAAACG-----AAAGGAGCTGTGAATCTTTGA---- 1449
||| .|| ||||| ||.|.|||.|
BL03448 1514 TATCCTTC-----CCGTTTCAAAAGG------GATTTTTTAAATAA 1548
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