Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05191 and BL03439

See Amino acid alignment / Visit BSNT_05191 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:19
# Commandline: needle
#    -asequence dna-align/BSNT_05191___yveM.1.5803.seq
#    -bsequence dna-align/BL03439___yveM.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05191___yveM-BL03439___yveM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05191___yveM-BL03439___yveM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05191___yveM
# 2: BL03439___yveM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1995
# Identity:    1243/1995 (62.3%)
# Similarity:  1243/1995 (62.3%)
# Gaps:         375/1995 (18.8%)
# Score: 3819.0
# 
#
#=======================================

BSNT_05191___      1 ------------------------ATGATTATTGCGCTGGATACTTACCT     26
                                             ||.||||..||.||.|||.|.|||.|
BL03439___yve      1 TTGACATATCGGAGAAGGCTTTCCATTATTACCGCACTCGATTCGTACTT     50

BSNT_05191___     27 CGTTTTAAATTCAGTTATTGCAGGATATCAATTTTTAAAGGATTCCTATC     76
                     .|||||                 |.|.||.||.||||..|||    ||||
BL03439___yve     51 GGTTTT-----------------GCTGTCCATCTTTATCGGA----TATC     79

BSNT_05191___     77 A----ATTT--------TATGA--------CTCCGGAGCATTACTGCTTA    106
                     |    ||||        |||||        ||.||||  |.|.|||||.|
BL03439___yve     80 AGCTGATTTTGCCATCATATGATTTATACCCTTCGGA--AATGCTGCTGA    127

BSNT_05191___    107 CCGCTGTCA--------GCTTGCTCCTCAGC---TAT-----CATGTGTG    140
                     ...|| |||        |||||...||||||   |||     |||     
BL03439___yve    128 TGACT-TCACTGATACTGCTTGGCGCTCAGCATTTATTCGCCCAT-----    171

BSNT_05191___    141 TGCTTTCCTGTTCAATCAGTATAAACAGGTGTGGACATACACCGGACTTG    190
                     |||       |||.|.|..||||||.|.||.||          |||.|..
BL03439___yve    172 TGC-------TTCCACCTTTATAAAAAAGTATG----------GGAGTAT    204

BSNT_05191___    191 GCGAGC----------TGATTGTCCTGCTTAAGGGGATTACGCTTTCCGC    230
                     ||.|||          ||..|||.||||||||...||||||..|.||| |
BL03439___yve    205 GCAAGCATCGGTGAATTGTATGTGCTGCTTAAATCGATTACATTGTCC-C    253

BSNT_05191___    231 CGC-TGTGAC--CGGTATCATTC-AGTATGCTGTGTATCAT--ACGATGT    274
                     ..| ||||||  |||   |..|| |    |||||.|.||.|  |..|.||
BL03439___yve    254 ATCTTGTGACGGCGG---CCCTCGA----GCTGTTTTTCTTTCAAAACGT    296

BSNT_05191___    275 TC---TTCCGTCTGTTAACCGCGT----GCTGGGTGCTTCAGC---TTTT    314
                     ||   || |||||.|||    .||    |||||.||.|.||||   ||||
BL03439___yve    297 TCCGGTT-CGTCTTTTA----TGTTTAAGCTGGCTGTTCCAGCTCATTTT    341

BSNT_05191___    315 GTCTATTGGAGGGACCCGTATTTT-------ATC--CAGAGTA----TTA    351
                     |   ||.||.||..|.||.||..|       |||  |||.|.|    |.|
BL03439___yve    342 G---ATCGGCGGATCGCGGATGATGTGGCGCATCATCAGGGAACAGGTGA    388

BSNT_05191___    352 --AACGAAAGCATCAGGAAAAAACGCTGCGCCTCGTCCC---GCGCGCTG    396
                       ||.||||||| .||||                 ||.|   |.|||||.
BL03439___yve    389 ACAAAGAAAGCA-AAGGA-----------------TCTCTAAGGGCGCTT    420

BSNT_05191___    397 ATTATCGGGGCGGGCTCAGGTGGGACTCTGATGGTCAGGCAGCT------    440
                     ||.|||||.||||||||.|..||.|.|.||||.|..|..|||||      
BL03439___yve    421 ATCATCGGAGCGGGCTCTGCCGGCAGTTTGATTGCAAAACAGCTTGTGCA    470

BSNT_05191___    441 ---GCTTTCGAAAGATGAACCTGATATCATACCTGTCGCTTTTATTGATG    487
                        ||   ||.|| .|||||     ||.|..||.|||||.|||||.||.|
BL03439___yve    471 GAAGC---CGGAA-TTGAAC-----ATTAAGCCCGTCGCCTTTATCGACG    511

BSNT_05191___    488 ACGACCAAACGAAGCATAAAT------TAGAAATTATGGGGCTGCCCGTA    531
                     |.|||.|||||      ||||      |.|||||.|||||.||||||||.
BL03439___yve    512 ATGACAAAACG------AAATACCGGCTTGAAATCATGGGTCTGCCCGTC    555

BSNT_05191___    532 ATCGGCGGTAAAGA-AAGTATCATGCCTGCGGTGCAAAAGCTCAAAATTA    580
                     .|.|||||.||||| .|| ||.||||..|||||.|   .||    |||..
BL03439___yve    556 TTAGGCGGGAAAGAGCAG-ATTATGCAGGCGGTCC---GGC----AATGG    597

BSNT_05191___    581 ATTAT-------ATTATTATTGCCATTC----------CTTCACTCCGCA    613
                     |.|||       ||.||.||.|||||||          |.||||||    
BL03439___yve    598 AATATCGACCGGATCATCATCGCCATTCCATCTTTGAGCGTCACTC----    643

BSNT_05191___    614 CCCATGAGCTTCAGGTGTTATATAAAGAATGTGTGCGAACCGGAGT----    659
                           ||.|.||||...|.||.||.|..||||.||.|||.||.||    
BL03439___yve    644 ------AGATGCAGGAAATGTACAAGGCGTGTGCGCAAACAGGTGTCAAA    687

BSNT_05191___    660 AAGCATTAAAATTATGCCTCATTTTGATGAAATGCTGCTTGGCACACGAA    709
                     |.||    ||||.|||||..|..|.||.|||||..|||||||||.||...
BL03439___yve    688 ACGC----AAATCATGCCGAAAATAGACGAAATTTTGCTTGGCAGACATC    733

BSNT_05191___    710 CTGCCGGACAAATCAGAGATGTAAAGGCTGAGGACTTGCTCGGCAGAAAG    759
                     |||.|||.||..|..|.|||||.||.||.||.||.|||||.||.||..||
BL03439___yve    734 CTGTCGGCCAGCTTCGCGATGTCAAAGCAGAAGATTTGCTTGGAAGGGAG    783

BSNT_05191___    760 CCGGTAACC--CTCGACACTAGCGAAATTTC------------GAACCGC    795
                     ||.||  ||  |||||.||.||||||||.||            |.|||||
BL03439___yve    784 CCTGT--CCAGCTCGATACGAGCGAAATCTCCAATACGGTCAAGGACCGC    831

BSNT_05191___    796 ATCAAAGGAAAAACAGTTCTTGTCACGGGAGCGGGCGGATCAATCGGCTC    845
                     .||            ||.|||||.||.||.||.||.||.|||||||||||
BL03439___yve    832 GTC------------GTACTTGTGACTGGGGCCGGAGGTTCAATCGGCTC    869

BSNT_05191___    846 GGAAATCTGCCGTCAGATCAGTGCGTTTCAGCCTAAGGAA----ATCATT    891
                     ||||||||||||.||.|||||....|||.|.||    |||    ||||||
BL03439___yve    870 GGAAATCTGCCGGCAAATCAGCAAATTTAAACC----GAAATCGATCATT    915

BSNT_05191___    892 CTGCTCGGCCATGGGGAAAACAGCATTCATTCGAT-----TTATACAGAG    936
                     .|..||||.||.||.|||||||||||.||||||||     ||     ||.
BL03439___yve    916 TTAGTCGGGCACGGAGAAAACAGCATCCATTCGATCCTGCTT-----GAA    960

BSNT_05191___    937 CTGAACGGACG--ATTCGGCAAACACATTGTGTTCC-----ATACGGAAA    979
                     ||||| ||| |  ||||||.||.||     |||..|     ||.|.||||
BL03439___yve    961 CTGAA-GGA-GAAATTCGGAAAGCA-----TGTCGCCTATTATCCCGAAA   1003

BSNT_05191___    980 TCGCTGATGTGCAGGACCGCGATAAAATGTTTACCTTGATGAAAAAATAC   1029
                     ||||.||..|.||||||.|.||.|||||||||....|||||.||...|||
BL03439___yve   1004 TCGCGGACATACAGGACAGAGAAAAAATGTTTTTGCTGATGGAACGCTAC   1053

BSNT_05191___   1030 GAGCCGCATGTTGTCTATCATGCAGCTGCCCATAAGCATGTGCCTTTAAT   1079
                     .|.|||.||||..|.|||||||||||||||||.||||||||.||..|.||
BL03439___yve   1054 AAACCGAATGTCATTTATCATGCAGCTGCCCACAAGCATGTACCGCTGAT   1103

BSNT_05191___   1080 GGAACACAAT--CCTGAAGAGGCGGTCAAAAACAATATTATCGGAACAAA   1127
                     |||  |.|||  ||..||||.||.||||||||||||||..||||.||.||
BL03439___yve   1104 GGA--AAAATGCCCGAAAGAAGCTGTCAAAAACAATATCCTCGGCACGAA   1151

BSNT_05191___   1128 AAATGTCGCGGAAGCAGCCGATATGTCGGGAAC------AGAGACATTCG   1171
                     |||.|||||.||.||.|||||      .|.|||      .||||||||.|
BL03439___yve   1152 AAACGTCGCTGAGGCCGCCGA------CGAAACCGAAGTGGAGACATTTG   1195

BSNT_05191___   1172 TGCTGATTTCATCGGACAAAGCGGTGAACCCAGCCAACGTAATGGGGGCG   1221
                     |.|||||.||.||.|||||||||||.|||||.|||||..|.||||||||.
BL03439___yve   1196 TCCTGATATCGTCAGACAAAGCGGTCAACCCTGCCAATATCATGGGGGCA   1245

BSNT_05191___   1222 ACAAAACGATTCGCAGAGATGATTATTATGAATCTTGGGAAAGTCAGCAG   1271
                     ||.||.||.|||||.||.|||.|.||.||||||||.||.|||...||||.
BL03439___yve   1246 ACGAAGCGGTTCGCGGAAATGCTGATCATGAATCTCGGCAAAACGAGCAA   1295

BSNT_05191___   1272 AACCAAATTTGTTGCTGTTCGCTTCGGCAATGTACTCGGGAGCCGCGGCA   1321
                     ||||||||||||.||.||.||||||||.|||||.|||||.|||.|.||.|
BL03439___yve   1296 AACCAAATTTGTCGCCGTCCGCTTCGGAAATGTTCTCGGCAGCAGGGGAA   1345

BSNT_05191___   1322 GCGTCATTCCGATTTTCAAAAAACAGATTGAAAAAGGCGGCCCGGTGACA   1371
                     |||||||||||||||||||||||||.||.|..||||||||||||||.||.
BL03439___yve   1346 GCGTCATTCCGATTTTCAAAAAACAAATCGCTAAAGGCGGCCCGGTCACT   1395

BSNT_05191___   1372 GTAACACATCCGGCAATGACCCGCTATTTCATGACGATTCCCGAGGCATC   1421
                     ||.|||||.|.||..|||||..|.||.||||||||||||||.||.||.||
BL03439___yve   1396 GTCACACACCAGGACATGACGAGGTACTTCATGACGATTCCGGAAGCTTC   1445

BSNT_05191___   1422 AAGGCTTGTGATTCAGGCTGGGGCACTGGCGAAAGGGCGTCAAATTTTCG   1471
                     ||||||.||.|||||.||.|||||.||.||.|||||..|.||.||.||||
BL03439___yve   1446 AAGGCTCGTTATTCAAGCGGGGGCGCTTGCCAAAGGAAGACAGATATTCG   1495

BSNT_05191___   1472 TTCTCGATATGGGAGAGCCCGTAAAGATTGTGGATCTTGCCAAAAACCTC   1521
                     |.|||||||||||.||.||.||.||.||.||.||.||.||||||||.||.
BL03439___yve   1496 TGCTCGATATGGGCGAACCGGTCAAAATCGTCGACCTCGCCAAAAATCTT   1545

BSNT_05191___   1522 ATTCATTTGTCCGGCTACACGACTGAGCAGGTTCCAATCGAATTCACAGG   1571
                     ||.||..|.||||||||.|||||.||.|||.|...|||||||||.|||||
BL03439___yve   1546 ATCCAGCTTTCCGGCTATACGACAGAACAGATCAAAATCGAATTTACAGG   1595

BSNT_05191___   1572 CATTCGTCCGGGCGAAAAAATGTATGAAGAATTACTGAACAAAAATGAAG   1621
                     |||.||.|||||.|||||||||||.|||||..|.|||||..|||||||||
BL03439___yve   1596 CATCCGGCCGGGAGAAAAAATGTACGAAGAGCTGCTGAATCAAAATGAAG   1645

BSNT_05191___   1622 TCCATGCTGAACAAATCTTTCCAAAAATTCACATCGGTAAAGCGGTAGAT   1671
                     |.|..||.||.||..|.|||||.||.|||||.|||||.||.|||||.||.
BL03439___yve   1646 TGCTGGCAGAGCAGGTTTTTCCGAAGATTCATATCGGCAAGGCGGTCGAC   1695

BSNT_05191___   1672 GGCGATTGGCCGGTGCTGATGCGCTTTATCGAGGA----------TTTTC   1711
                     |.|||.|||.|||||||||.|...|||||.||.||          ||.||
BL03439___yve   1696 GTCGAATGGACGGTGCTGAAGTCATTTATGGATGAATTTATGTATTTGTC   1745

BSNT_05191___   1712 ATAAGCTGCCGGAAGCTGACCTGAGAGCGAGGC-TGTT--------TGCG   1752
                     |.|     |||..||||||   ||||   |.|| ||||        | ||
BL03439___yve   1746 AGA-----CCGCGAGCTGA---GAGA---ACGCTTGTTCAAAGCGAT-CG   1783

BSNT_05191___   1753 GCAATCAATACATCAGAAGAAATGACGGCTGCCAGCGTTCATTAG   1797
                     ||        ||.||..|||||...|.|.||.|||||  ||.|||
BL03439___yve   1784 GC--------CAGCACGAGAAAAAGCTGGTGACAGCG--CACTAG   1818


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