Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05191 and BL03439
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:19
# Commandline: needle
# -asequence dna-align/BSNT_05191___yveM.1.5803.seq
# -bsequence dna-align/BL03439___yveM.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05191___yveM-BL03439___yveM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05191___yveM-BL03439___yveM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05191___yveM
# 2: BL03439___yveM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1995
# Identity: 1243/1995 (62.3%)
# Similarity: 1243/1995 (62.3%)
# Gaps: 375/1995 (18.8%)
# Score: 3819.0
#
#
#=======================================
BSNT_05191___ 1 ------------------------ATGATTATTGCGCTGGATACTTACCT 26
||.||||..||.||.|||.|.|||.|
BL03439___yve 1 TTGACATATCGGAGAAGGCTTTCCATTATTACCGCACTCGATTCGTACTT 50
BSNT_05191___ 27 CGTTTTAAATTCAGTTATTGCAGGATATCAATTTTTAAAGGATTCCTATC 76
.||||| |.|.||.||.||||..||| ||||
BL03439___yve 51 GGTTTT-----------------GCTGTCCATCTTTATCGGA----TATC 79
BSNT_05191___ 77 A----ATTT--------TATGA--------CTCCGGAGCATTACTGCTTA 106
| |||| ||||| ||.|||| |.|.|||||.|
BL03439___yve 80 AGCTGATTTTGCCATCATATGATTTATACCCTTCGGA--AATGCTGCTGA 127
BSNT_05191___ 107 CCGCTGTCA--------GCTTGCTCCTCAGC---TAT-----CATGTGTG 140
...|| ||| |||||...|||||| ||| |||
BL03439___yve 128 TGACT-TCACTGATACTGCTTGGCGCTCAGCATTTATTCGCCCAT----- 171
BSNT_05191___ 141 TGCTTTCCTGTTCAATCAGTATAAACAGGTGTGGACATACACCGGACTTG 190
||| |||.|.|..||||||.|.||.|| |||.|..
BL03439___yve 172 TGC-------TTCCACCTTTATAAAAAAGTATG----------GGAGTAT 204
BSNT_05191___ 191 GCGAGC----------TGATTGTCCTGCTTAAGGGGATTACGCTTTCCGC 230
||.||| ||..|||.||||||||...||||||..|.||| |
BL03439___yve 205 GCAAGCATCGGTGAATTGTATGTGCTGCTTAAATCGATTACATTGTCC-C 253
BSNT_05191___ 231 CGC-TGTGAC--CGGTATCATTC-AGTATGCTGTGTATCAT--ACGATGT 274
..| |||||| ||| |..|| | |||||.|.||.| |..|.||
BL03439___yve 254 ATCTTGTGACGGCGG---CCCTCGA----GCTGTTTTTCTTTCAAAACGT 296
BSNT_05191___ 275 TC---TTCCGTCTGTTAACCGCGT----GCTGGGTGCTTCAGC---TTTT 314
|| || |||||.||| .|| |||||.||.|.|||| ||||
BL03439___yve 297 TCCGGTT-CGTCTTTTA----TGTTTAAGCTGGCTGTTCCAGCTCATTTT 341
BSNT_05191___ 315 GTCTATTGGAGGGACCCGTATTTT-------ATC--CAGAGTA----TTA 351
| ||.||.||..|.||.||..| ||| |||.|.| |.|
BL03439___yve 342 G---ATCGGCGGATCGCGGATGATGTGGCGCATCATCAGGGAACAGGTGA 388
BSNT_05191___ 352 --AACGAAAGCATCAGGAAAAAACGCTGCGCCTCGTCCC---GCGCGCTG 396
||.||||||| .|||| ||.| |.|||||.
BL03439___yve 389 ACAAAGAAAGCA-AAGGA-----------------TCTCTAAGGGCGCTT 420
BSNT_05191___ 397 ATTATCGGGGCGGGCTCAGGTGGGACTCTGATGGTCAGGCAGCT------ 440
||.|||||.||||||||.|..||.|.|.||||.|..|..|||||
BL03439___yve 421 ATCATCGGAGCGGGCTCTGCCGGCAGTTTGATTGCAAAACAGCTTGTGCA 470
BSNT_05191___ 441 ---GCTTTCGAAAGATGAACCTGATATCATACCTGTCGCTTTTATTGATG 487
|| ||.|| .||||| ||.|..||.|||||.|||||.||.|
BL03439___yve 471 GAAGC---CGGAA-TTGAAC-----ATTAAGCCCGTCGCCTTTATCGACG 511
BSNT_05191___ 488 ACGACCAAACGAAGCATAAAT------TAGAAATTATGGGGCTGCCCGTA 531
|.|||.||||| |||| |.|||||.|||||.||||||||.
BL03439___yve 512 ATGACAAAACG------AAATACCGGCTTGAAATCATGGGTCTGCCCGTC 555
BSNT_05191___ 532 ATCGGCGGTAAAGA-AAGTATCATGCCTGCGGTGCAAAAGCTCAAAATTA 580
.|.|||||.||||| .|| ||.||||..|||||.| .|| |||..
BL03439___yve 556 TTAGGCGGGAAAGAGCAG-ATTATGCAGGCGGTCC---GGC----AATGG 597
BSNT_05191___ 581 ATTAT-------ATTATTATTGCCATTC----------CTTCACTCCGCA 613
|.||| ||.||.||.||||||| |.||||||
BL03439___yve 598 AATATCGACCGGATCATCATCGCCATTCCATCTTTGAGCGTCACTC---- 643
BSNT_05191___ 614 CCCATGAGCTTCAGGTGTTATATAAAGAATGTGTGCGAACCGGAGT---- 659
||.|.||||...|.||.||.|..||||.||.|||.||.||
BL03439___yve 644 ------AGATGCAGGAAATGTACAAGGCGTGTGCGCAAACAGGTGTCAAA 687
BSNT_05191___ 660 AAGCATTAAAATTATGCCTCATTTTGATGAAATGCTGCTTGGCACACGAA 709
|.|| ||||.|||||..|..|.||.|||||..|||||||||.||...
BL03439___yve 688 ACGC----AAATCATGCCGAAAATAGACGAAATTTTGCTTGGCAGACATC 733
BSNT_05191___ 710 CTGCCGGACAAATCAGAGATGTAAAGGCTGAGGACTTGCTCGGCAGAAAG 759
|||.|||.||..|..|.|||||.||.||.||.||.|||||.||.||..||
BL03439___yve 734 CTGTCGGCCAGCTTCGCGATGTCAAAGCAGAAGATTTGCTTGGAAGGGAG 783
BSNT_05191___ 760 CCGGTAACC--CTCGACACTAGCGAAATTTC------------GAACCGC 795
||.|| || |||||.||.||||||||.|| |.|||||
BL03439___yve 784 CCTGT--CCAGCTCGATACGAGCGAAATCTCCAATACGGTCAAGGACCGC 831
BSNT_05191___ 796 ATCAAAGGAAAAACAGTTCTTGTCACGGGAGCGGGCGGATCAATCGGCTC 845
.|| ||.|||||.||.||.||.||.||.|||||||||||
BL03439___yve 832 GTC------------GTACTTGTGACTGGGGCCGGAGGTTCAATCGGCTC 869
BSNT_05191___ 846 GGAAATCTGCCGTCAGATCAGTGCGTTTCAGCCTAAGGAA----ATCATT 891
||||||||||||.||.|||||....|||.|.|| ||| ||||||
BL03439___yve 870 GGAAATCTGCCGGCAAATCAGCAAATTTAAACC----GAAATCGATCATT 915
BSNT_05191___ 892 CTGCTCGGCCATGGGGAAAACAGCATTCATTCGAT-----TTATACAGAG 936
.|..||||.||.||.|||||||||||.|||||||| || ||.
BL03439___yve 916 TTAGTCGGGCACGGAGAAAACAGCATCCATTCGATCCTGCTT-----GAA 960
BSNT_05191___ 937 CTGAACGGACG--ATTCGGCAAACACATTGTGTTCC-----ATACGGAAA 979
||||| ||| | ||||||.||.|| |||..| ||.|.||||
BL03439___yve 961 CTGAA-GGA-GAAATTCGGAAAGCA-----TGTCGCCTATTATCCCGAAA 1003
BSNT_05191___ 980 TCGCTGATGTGCAGGACCGCGATAAAATGTTTACCTTGATGAAAAAATAC 1029
||||.||..|.||||||.|.||.|||||||||....|||||.||...|||
BL03439___yve 1004 TCGCGGACATACAGGACAGAGAAAAAATGTTTTTGCTGATGGAACGCTAC 1053
BSNT_05191___ 1030 GAGCCGCATGTTGTCTATCATGCAGCTGCCCATAAGCATGTGCCTTTAAT 1079
.|.|||.||||..|.|||||||||||||||||.||||||||.||..|.||
BL03439___yve 1054 AAACCGAATGTCATTTATCATGCAGCTGCCCACAAGCATGTACCGCTGAT 1103
BSNT_05191___ 1080 GGAACACAAT--CCTGAAGAGGCGGTCAAAAACAATATTATCGGAACAAA 1127
||| |.||| ||..||||.||.||||||||||||||..||||.||.||
BL03439___yve 1104 GGA--AAAATGCCCGAAAGAAGCTGTCAAAAACAATATCCTCGGCACGAA 1151
BSNT_05191___ 1128 AAATGTCGCGGAAGCAGCCGATATGTCGGGAAC------AGAGACATTCG 1171
|||.|||||.||.||.||||| .|.||| .||||||||.|
BL03439___yve 1152 AAACGTCGCTGAGGCCGCCGA------CGAAACCGAAGTGGAGACATTTG 1195
BSNT_05191___ 1172 TGCTGATTTCATCGGACAAAGCGGTGAACCCAGCCAACGTAATGGGGGCG 1221
|.|||||.||.||.|||||||||||.|||||.|||||..|.||||||||.
BL03439___yve 1196 TCCTGATATCGTCAGACAAAGCGGTCAACCCTGCCAATATCATGGGGGCA 1245
BSNT_05191___ 1222 ACAAAACGATTCGCAGAGATGATTATTATGAATCTTGGGAAAGTCAGCAG 1271
||.||.||.|||||.||.|||.|.||.||||||||.||.|||...||||.
BL03439___yve 1246 ACGAAGCGGTTCGCGGAAATGCTGATCATGAATCTCGGCAAAACGAGCAA 1295
BSNT_05191___ 1272 AACCAAATTTGTTGCTGTTCGCTTCGGCAATGTACTCGGGAGCCGCGGCA 1321
||||||||||||.||.||.||||||||.|||||.|||||.|||.|.||.|
BL03439___yve 1296 AACCAAATTTGTCGCCGTCCGCTTCGGAAATGTTCTCGGCAGCAGGGGAA 1345
BSNT_05191___ 1322 GCGTCATTCCGATTTTCAAAAAACAGATTGAAAAAGGCGGCCCGGTGACA 1371
|||||||||||||||||||||||||.||.|..||||||||||||||.||.
BL03439___yve 1346 GCGTCATTCCGATTTTCAAAAAACAAATCGCTAAAGGCGGCCCGGTCACT 1395
BSNT_05191___ 1372 GTAACACATCCGGCAATGACCCGCTATTTCATGACGATTCCCGAGGCATC 1421
||.|||||.|.||..|||||..|.||.||||||||||||||.||.||.||
BL03439___yve 1396 GTCACACACCAGGACATGACGAGGTACTTCATGACGATTCCGGAAGCTTC 1445
BSNT_05191___ 1422 AAGGCTTGTGATTCAGGCTGGGGCACTGGCGAAAGGGCGTCAAATTTTCG 1471
||||||.||.|||||.||.|||||.||.||.|||||..|.||.||.||||
BL03439___yve 1446 AAGGCTCGTTATTCAAGCGGGGGCGCTTGCCAAAGGAAGACAGATATTCG 1495
BSNT_05191___ 1472 TTCTCGATATGGGAGAGCCCGTAAAGATTGTGGATCTTGCCAAAAACCTC 1521
|.|||||||||||.||.||.||.||.||.||.||.||.||||||||.||.
BL03439___yve 1496 TGCTCGATATGGGCGAACCGGTCAAAATCGTCGACCTCGCCAAAAATCTT 1545
BSNT_05191___ 1522 ATTCATTTGTCCGGCTACACGACTGAGCAGGTTCCAATCGAATTCACAGG 1571
||.||..|.||||||||.|||||.||.|||.|...|||||||||.|||||
BL03439___yve 1546 ATCCAGCTTTCCGGCTATACGACAGAACAGATCAAAATCGAATTTACAGG 1595
BSNT_05191___ 1572 CATTCGTCCGGGCGAAAAAATGTATGAAGAATTACTGAACAAAAATGAAG 1621
|||.||.|||||.|||||||||||.|||||..|.|||||..|||||||||
BL03439___yve 1596 CATCCGGCCGGGAGAAAAAATGTACGAAGAGCTGCTGAATCAAAATGAAG 1645
BSNT_05191___ 1622 TCCATGCTGAACAAATCTTTCCAAAAATTCACATCGGTAAAGCGGTAGAT 1671
|.|..||.||.||..|.|||||.||.|||||.|||||.||.|||||.||.
BL03439___yve 1646 TGCTGGCAGAGCAGGTTTTTCCGAAGATTCATATCGGCAAGGCGGTCGAC 1695
BSNT_05191___ 1672 GGCGATTGGCCGGTGCTGATGCGCTTTATCGAGGA----------TTTTC 1711
|.|||.|||.|||||||||.|...|||||.||.|| ||.||
BL03439___yve 1696 GTCGAATGGACGGTGCTGAAGTCATTTATGGATGAATTTATGTATTTGTC 1745
BSNT_05191___ 1712 ATAAGCTGCCGGAAGCTGACCTGAGAGCGAGGC-TGTT--------TGCG 1752
|.| |||..|||||| |||| |.|| |||| | ||
BL03439___yve 1746 AGA-----CCGCGAGCTGA---GAGA---ACGCTTGTTCAAAGCGAT-CG 1783
BSNT_05191___ 1753 GCAATCAATACATCAGAAGAAATGACGGCTGCCAGCGTTCATTAG 1797
|| ||.||..|||||...|.|.||.||||| ||.|||
BL03439___yve 1784 GC--------CAGCACGAGAAAAAGCTGGTGACAGCG--CACTAG 1818
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