Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05193 and BL03437

See Amino acid alignment / Visit BSNT_05193 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:19
# Commandline: needle
#    -asequence dna-align/BSNT_05193___yveK.1.5803.seq
#    -bsequence dna-align/BL03437___yveK.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05193___yveK-BL03437___yveK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05193___yveK-BL03437___yveK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05193___yveK
# 2: BL03437___yveK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 857
# Identity:     456/857 (53.2%)
# Similarity:   456/857 (53.2%)
# Gaps:         256/857 (29.9%)
# Score: 1057.5
# 
#
#=======================================

BSNT_05193___      1 ATGAATGAGAATA-TGAGTTTCAAAGAA-TTATATGCGATTGTCAGACAC     48
                     |||||.||.|||| ||| |||.|.|||| |.|| |||.||..|..||.|.
BL03437___yve      1 ATGAAAGAAAATATTGA-TTTTAGAGAACTGAT-TGCAATCTTGCGAAAA     48

BSNT_05193___     49 AGATTCGTGCTGATTCTGCTCATCACAATCGGCGTCACCCTTATT----A     94
                     |||...||.||.|||||..|..|.|||||.||.||.||    |||    |
BL03437___yve     49 AGAACGGTTCTTATTCTCGTTTTGACAATAGGTGTAAC----ATTGACGA     94

BSNT_05193___     95 TGGGTTTTGTGCAAT--TTAAGGTC-ATTT-----CACCGACCTACCAGG    136
                     ..||        |||  ||.||.|| ||.|     ||||...|||.||||
BL03437___yve     95 CCGG--------AATCATTCAGTTCTATGTGCTGACACCTGTCTATCAGG    136

BSNT_05193___    137 CGTCGACACAGGTGCTGGTTCATGAATCAGACGGTGAAGAAAACTCGAAT    186
                     |.|||||.|||.|..||||.|||.||..|    |.|.||||||       
BL03437___yve    137 CATCGACGCAGATCTTGGTGCATCAAGTA----GGGGAGAAAA-------    175

BSNT_05193___    187 CTCAGTG-------ACATCCAGCGA----------AATCTTCAGTATAGC    219
                        ||.|       ||||.||||||          ||||||||.||.| |
BL03437___yve    176 ---AGGGGAGCGCCACATACAGCGATATTCAAATCAATCTTCAATACA-C    221

BSNT_05193___    220 A-GCACGTTCCAATCGATTATGAAAAGCACTGCCTTGA---TGGAAGAAG    265
                     | |.||.||||||.||.||.||||||.|.|.|   |||   ||||..|||
BL03437___yve    222 ACGGACATTCCAAGCGCTTTTGAAAAACCCGG---TGATTTTGGAGCAAG    268

BSNT_05193___    266 TTAAG-----GC-GGAATTGCACCT--ATCTGAATCGGCTTCCTCGCTGA    307
                     |.|||     || .||.||  ||||  .||||  .||||....|.|.|||
BL03437___yve    269 TCAAGAGAGAGCTTGATTT--ACCTTACTCTG--CCGGCCGGTTGGGTGA    314

BSNT_05193___    308 AAGGAAAAGTGGTTACCAGCAGTGAAAATGAATCAGAAATCATTAACGTT    357
                         ||||.|.|..||.||||||||||..|||||.||.||.||.||..||
BL03437___yve    315 ----AAAAATTGCAACGAGCAGTGAAAGCGAATCTGAGATTATAAATATT    360

BSNT_05193___    358 GCCGTCCAGGATCACGATCCGGCGAAA---GCGGCTGAGATTGCGAACAC    404
                     .|.|||||.|||.|..|||   .||||   |||||.||.||.||||||||
BL03437___yve    361 TCGGTCCAAGATGAAAATC---AGAAACGGGCGGCCGATATAGCGAACAC    407

BSNT_05193___    405 GTTA------GTGAACAAGTTTGAAAAAGAAGTAGATGAAAGAATGAATG    448
                     .|||      |||..||      ||||||    ||||.||..||...|||
BL03437___yve    408 TTTAACTGCGGTGCTCA------AAAAAG----AGATTAAGCAAATTATG    447

BSNT_05193___    449 TACAAGGCGTACATATATTATCAGAGGCGAAGGCTTCTG---AAAGCC--    493
                     .|||..|            |||   ||..||...|.|||   ||||||  
BL03437___yve    448 AACACCG------------ATC---GGGTAACCGTCCTGTCAAAAGCCGA    482

BSNT_05193___    494 ------CGATGATCAAGCCG------GCCAGGCTGCGA-----------A    520
                           ||||  ||  ||||      |.|||.|  |||           |
BL03437___yve    483 AATAGTCGAT--TC--GCCGACACCTGTCAGAC--CGAATTACAAAATGA    526

BSNT_05193___    521 ATATGGTCATGGCTTTTGGCGCTGCTGTCATGGGCGGCATTACACTGGCA    570
                     ||||..|..||||.||.|||||.||..|.|||..|||.||..|..||||.
BL03437___yve    527 ATATTTTGCTGGCATTCGGCGCCGCATTAATGACCGGAATCGCTTTGGCG    576

BSNT_05193___    571 TTTTTTCTGCATTTTCTCGATGATAC--TTGCAAAA--GTGCACGGCAGC    616
                     ||.|||.||.|.|||.||||||||||  ||||||.|  ||         |
BL03437___yve    577 TTCTTTTTGGACTTTATCGATGATACGGTTGCAAGACCGT---------C    617

BSNT_05193___    617 TCA--GCGAGA--GAA-CCGGATTGCCAT------------------GC-    642
                     |||  .|||.|  ||| |.|||||  |||                  || 
BL03437___yve    618 TCAAGTCGAAAAGGAAGCGGGATT--CATTTATTTGGGAAGTATTGAGCA    665

BSNT_05193___    643 --TTAGGC----------TCCGTT----------CCTGATGTCCACAAAG    670
                       |.|.||          ||.|||          ||.|||.|        
BL03437___yve    666 AATGAAGCATAAAAAAAGTCTGTTTCGCGGGGACCCCGATAT--------    707

BSNT_05193___    671 GGCGGAAT---CGCGGGATAAAA-CATTTCGG--GGAGTGA---------    705
                         ||||   ||||   ||||| ||    ||  |||||||         
BL03437___yve    708 ----GAATATCCGCG---TAAAAGCA----GGAAGGAGTGAGCCGCTTGG    746

BSNT_05193___    705 -------    705
                            
BL03437___yve    747 GTATTAG    753


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05193 and BL03437

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
