Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05280 and BL03425
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:22
# Commandline: needle
# -asequence dna-align/BSNT_05280___yvdB.1.5803.seq
# -bsequence dna-align/BL03425___yvdB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05280___yvdB-BL03425___yvdB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05280___yvdB-BL03425___yvdB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05280___yvdB
# 2: BL03425___yvdB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1707
# Identity: 1134/1707 (66.4%)
# Similarity: 1134/1707 (66.4%)
# Gaps: 201/1707 (11.8%)
# Score: 3578.0
#
#
#=======================================
BSNT_05280___ 1 ATG---CGATTCTCAGGGAGATTCAAGGGATACAATTTGC----AGAAAT 43
||| |||||.|||||.|||||..|.||||||| || ||...|
BL03425___yvd 1 ATGTTACGATTTTCAGGCAGATTTGAAGGATACA----GCCTTAAGCGGT 46
BSNT_05280___ 44 TTCAGAAAGA-CTTGATTGCAGGTATCGTAGTAGGTGTCGTGGCAATTCC 92
||||.||||| .||| |.|||||.||.||.||.||.|||||.||.|||||
BL03425___yvd 47 TTCAAAAAGATATTG-TAGCAGGAATGGTCGTTGGAGTCGTCGCGATTCC 95
BSNT_05280___ 93 TTTAGGAATGGCGTTTGCCATTGCCTCGGGAGTCGAGCCTGAATATGGGC 142
..|.||.|||||.|||||.||.||||||||.||..|.||.|||.|.||.|
BL03425___yvd 96 GCTTGGCATGGCTTTTGCTATAGCCTCGGGGGTGAAACCGGAACACGGTC 145
BSNT_05280___ 143 TGTACACTGTTGTTATAGCAGGGATTTGTATTTCTTTGTTTGGAGGATCA 192
|.|||||.||..||.|.||.||.||||..|||||..|..|.||.||.||.
BL03425___yvd 146 TTTACACAGTGATTGTCGCCGGTATTTTGATTTCGCTTCTCGGCGGGTCG 195
BSNT_05280___ 193 AAATATCAGATTGGCGGTCCGACGGGCGCCTTTGTCCCGATTTTATTCGG 242
|||||.|||||||||||.|||||.||.||||||||||||||..|.||||.
BL03425___yvd 196 AAATACCAGATTGGCGGACCGACAGGGGCCTTTGTCCCGATCCTGTTCGC 245
BSNT_05280___ 243 CATTGTCATGCAATACGGCTTGGAAAATCTGCTGATTGCGGGGTTTATGG 292
.|||||..|.||||||||.||.||.||||||||||||||.||.|||||||
BL03425___yvd 246 TATTGTGCTCCAATACGGATTTGAGAATCTGCTGATTGCCGGTTTTATGG 295
BSNT_05280___ 293 CAGGAGTGATGCTGGTGCTGTTTGGGCTGTTTAAGCTCGGAAAAATAATG 342
|.||||||||.|||||..|.||.||||||.|.||.|||||.||.||.||.
BL03425___yvd 296 CCGGAGTGATTCTGGTCATATTAGGGCTGCTAAAACTCGGCAAGATCATC 345
BSNT_05280___ 343 AAATTCGTGCCCAAACCCGTTATCGTCGGTTTTACAGCCGGAATTGCCGT 392
|||||..|.||....||.||.|||.||||.|||||.||||||||.||.||
BL03425___yvd 346 AAATTTATTCCGCGGCCGGTGATCATCGGATTTACGGCCGGAATCGCGGT 395
BSNT_05280___ 393 GCTGATCTTTACGGAACAAATCGCTAATTTTCTCGGATTGAGAAATGTTG 442
|.|.||.||.||.|.|.|||||||.||.|||.|.||.|||||||||||.|
BL03425___yvd 396 GATTATTTTCACCGGAGAAATCGCCAAGTTTTTAGGCTTGAGAAATGTCG 445
BSNT_05280___ 443 AAAAACATGAGAACTTTCATCACAACATGTTTGAAATTGTGCAGCA---- 488
|.||.|||||||..|||.||...||.|||...||..|||| ||.||
BL03425___yvd 446 AGAAGCATGAGAGTTTTTATATGAATATGAGAGAGGTTGT-CATCAACCT 494
BSNT_05280___ 489 ------GCTCGGCACCTTTAAC-GTATATGCCATTTTGACAGCTGT--GA 529
||| ||.||||.|| | |||||||||.||||| .|
BL03425___yvd 495 GAATACGCT---CAGCTTTTACAG-------CATTTTGACGGCTGTCGTA 534
BSNT_05280___ 530 TCGGGCTCGTCATTTTGCTTGTATCCGCC-AAGGTGATGCCTAAAGTGCC 578
|| ||||.||.||.||| |||.|.|||| |||||..||||.||||||||
BL03425___yvd 535 TC--GCTCTTCTTTGTGC-TGTTTACGCCAAAGGTTCTGCCGAAAGTGCC 581
BSNT_05280___ 579 GGGCGCTTTGTTGGC--GCTT-CTTATTTCCACAG---TGGTCGCGGTTG 622
|||.|| |.|.|| |||| |||.|.||.||.| |||.|.||.|
BL03425___yvd 582 GGGAGC---GCTCGCAGGCTTGCTTGTATCAACGGTCATGGCCACGAT-- 626
BSNT_05280___ 623 TCTTTTTCCCTGACCGCATGGCAACGATCGGGTCAACTTATGGAGAAATC 672
.||.|||||| ||.|...|||..||||||||.|||.||||.||.|||||.
BL03425___yvd 627 GCTGTTTCCC-GAACAGGTGGTGACGATCGGATCAGCTTACGGCGAAATT 675
BSNT_05280___ 673 CCCCGCCATTTGCCGGAATTTCAGTTTCCTGAGCTTACTTTGGATAAAAT 722
||.|||...||||||...|||||.|||||||||.|..|.|||||.|||||
BL03425___yvd 676 CCGCGCAGCTTGCCGAGCTTTCAATTTCCTGAGTTGTCATTGGAAAAAAT 725
BSNT_05280___ 723 GGTTATGCTGTTTCCGGCTGCGCTTGTCATCGCGCTTCTTGGAGGACTTG 772
..||...|||.|.||..|.||.||||..||.||..|.||.||||||.|.|
BL03425___yvd 726 CATTTACCTGATGCCTCCCGCTCTTGCGATTGCAATGCTCGGAGGAATCG 775
BSNT_05280___ 773 AGTCGATTTTGTCCGCAATGGTCGCTGATAACATGAAGGGCTCAAAGCAT 822
|.|||.|..|.|||||.|||||.||.||.||.||||||||..|||.||||
BL03425___yvd 776 AATCGCTGCTTTCCGCGATGGTGGCAGACAATATGAAGGGGACAAGGCAT 825
BSNT_05280___ 823 GACAGCAACAAGGAGCTTGTCGGCCAGGGGATTGCGAATATGGCAGCGCC 872
||||||||.||.||.|||||||||||.||.||||||||.||.||.||.||
BL03425___yvd 826 GACAGCAATAAAGAACTTGTCGGCCAAGGAATTGCGAACATCGCCGCACC 875
BSNT_05280___ 873 CCTGTTTGGCGGAATCCCGGCTACAGGAGCGATTGCGAGAACGGCGACCA 922
.|||||.|||||.||.|||||.|||||.||||||||..|.||||||||||
BL03425___yvd 876 GCTGTTCGGCGGTATTCCGGCGACAGGTGCGATTGCCCGTACGGCGACCA 925
BSNT_05280___ 923 ATATAAAAAACGGAGCGGTTTCCCCAGTTTCCGGCGTCGTTCACGGCGTA 972
||||.||||..||.||.|.|||.||..||||.||..||||.|||||.||.
BL03425___yvd 926 ATATTAAAACGGGCGCTGCTTCTCCGATTTCAGGTATCGTACACGGTGTG 975
BSNT_05280___ 973 GTCGTTCTCCTTGTCCTGCTTGTATTTGCGCCTTATGCGTCCCATGTGCC 1022
.|||||.|..|.||.||||||.|.||||||||.||.||.||||.|.|.||
BL03425___yvd 976 TTCGTTTTATTGGTTCTGCTTTTGTTTGCGCCATACGCTTCCCTTATCCC 1025
BSNT_05280___ 1023 GCTCGCCAGTATGGCACCGATTCTCATGGTGGTCGCATGGAATATGAGTG 1072
|||.||.||.|||.|.||||||.|.||||||||.||.|||||||||||||
BL03425___yvd 1026 GCTTGCAAGCATGTCGCCGATTTTGATGGTGGTTGCTTGGAATATGAGTG 1075
BSNT_05280___ 1073 AGCGCAAGGAAGTCGCAAACATGCTGAGACTGAAAAATGCTGA------- 1115
||||.||.||..|...|||.||..|||.|.|.|.||||.|.||
BL03425___yvd 1076 AGCGGAAAGAGTTTATAAATATTTTGAAAATTAGAAATTCAGACTCTGCC 1125
BSNT_05280___ 1116 ----------------TTCCTTTA---TTTTGGCGGCGACCTTCGCCCTT 1146
|||.|||| .||||||.| ||.|
BL03425___yvd 1126 GTGCTTGTCGTCACATTTCTTTTAACCGTTTGGCAG-GATC--------- 1165
BSNT_05280___ 1147 ACGGTTCTGTTTGACTTAATCATCGGTGTGGCAACCGGATTGCTGCTTGC 1196
||.||||| ||.|||||..||||..|.|||||.||
BL03425___yvd 1166 ----TTGTGTTT------------GGGGTGGCGGCCGGGATCCTGCTGGC 1199
BSNT_05280___ 1197 ATTCGTGTTCTTTATCAGAAGAATGAGCGAAG-CGACCCGCATCCACAAT 1245
..||.|...|||||||...||||||||| ||| ||..||||||..|.||
BL03425___yvd 1200 GATCATCACCTTTATCGCCAGAATGAGC-AAGTCGTTCCGCATTAAAAA- 1247
BSNT_05280___ 1246 CAG--------GAAACG--CATCCTGT-----TCTG--GCGAAGAGAGAA 1278
|| |||.|| |.|||.|| .||| |||.| |||.||
BL03425___yvd 1248 -AGATGTGTCTGAATCGATCGTCCAGTCGGCAGCTGCAGCGGA-AGAAAA 1295
BSNT_05280___ 1279 G-------ATCCATCTGTCAGCATGTATGCCATAGAAGGGCCGCTGTTTT 1321
| |.|..|||||||||||.|||.|..|.|||||.||||||||||
BL03425___yvd 1296 GCATTTTCAACGCTCTGTCAGCATCTATTCGGTTGAAGGCCCGCTGTTTT 1345
BSNT_05280___ 1322 TCGGATCAATTGATTCCCTTGAATCGTCATTGCTGGA-GCA----TGTAC 1366
||||.||| |.|||| ||||||..||| .|| ||.||
BL03425___yvd 1346 TCGGCTCA----------TCGAAT--TCATTGGAGGATTCAATTTTGGAC 1383
BSNT_05280___ 1367 AGAAAA----AACCG--AAAAC-CCTTATTCTGCTCATGAATAAGGTGCA 1409
||| |.||| ||||| |||.||.|||||.||||||||.||..|
BL03425___yvd 1384 ---AAAGGCCACCCGCCAAAACTCCTCATCCTGCTGATGAATAAAGTAGA 1430
BSNT_05280___ 1410 CTATATGGATACGTCAGCTGAAGCGGTGCTTGGGAACATTATGA--ATCG 1457
|||.|||||..|.||.||.||| ||.|.|.|.|||| ||||
BL03425___yvd 1431 CTACATGGACTCTTCCGCAGAA---------GGCAGCCTGATGACGATCG 1471
BSNT_05280___ 1458 AATTAAGCG---CCAC-------AATGGAAAGCTGATGATTGTAGGATTG 1497
|.||.|| |||| |..|||||| |||||||.||.||..|.
BL03425___yvd 1472 --TCAACCGTGTCCACCAGCAAAACGGGAAAG-TGATGATCGTGGGTCTT 1518
BSNT_05280___ 1498 CAATCGCAGCCAAAGGAGCTGCTGCATAAAACAGGCCTTTTTCACAAAAT 1547
||...||||||....|||||.||.|||||||||||.||.|||||.||.||
BL03425___yvd 1519 CAGCAGCAGCCGCGTGAGCTTCTTCATAAAACAGGGCTGTTTCATAAGAT 1568
BSNT_05280___ 1548 AGGAAAGCAGCATTTCTTTGATCA--CCATGA---------TGAAATCAC 1586
.||.||..|||||||..|.|| || || ||| |||..|.||
BL03425___yvd 1569 CGGCAAAAAGCATTTTGTCGA-CAGGCC-TGAACAAATATTTGACGTGAC 1616
BSNT_05280___ 1587 AGGTTAA 1593
| |||
BL03425___yvd 1617 A---TAA 1620
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