Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05289 and BL03422
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:23
# Commandline: needle
# -asequence dna-align/BSNT_05289___yvcN.1.5803.seq
# -bsequence dna-align/BL03422___nat.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05289___yvcN-BL03422___nat.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05289___yvcN-BL03422___nat.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05289___yvcN
# 2: BL03422___nat
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 876
# Identity: 486/876 (55.5%)
# Similarity: 486/876 (55.5%)
# Gaps: 237/876 (27.1%)
# Score: 1148.5
#
#
#=======================================
BSNT_05289___ 1 ATGAGTGACTTTCTAAAAGACTGC-----------TTTCAGAAAATCGGC 39
|||| .||| || ||| |||.||| ||.
BL03422___nat 1 ATGA-CGAC---------GA-TGCTCGATTCGCTGTTTAAGA-----GGA 34
BSNT_05289___ 40 TGGGAGA-AAGATCATGTCAGC--------TTCGGCGATCTTCCCC---T 77
|.|||.| ||| .||.|||||| ||.|.||| |||.||| |
BL03422___nat 35 TTGGATACAAG-CCAGGTCAGCAGGTGACATTTGCCGA-CTTGCCCGAGT 82
BSNT_05289___ 78 TTTTCTCAAAGCAATGGCATACCGTTTTCCATTCGAAAACCGTGCCGTAC 127
||||.||...|| ||||.|..|..||||||||.|||||..|.||.||..
BL03422___nat 83 TTTTATCGCTGC--TGGCTTTGCAGTTTCCATTTGAAAATGGCGCGGTTT 130
BSNT_05289___ 128 TTGCAAAAGA---GAATTATAAGATCACAAAAGAAGAGCTATGGCGACG- 173
|...|||.|| ||.|| .|||.||.|||..|||||| ||||
BL03422___nat 131 TAAGAAACGAACGGATTT---CGATGACGAAAACAGAGCT-----GACGG 172
BSNT_05289___ 174 -----TCTGCTCAAAGATCAGCACGGCGGCCTATGCTACGATTTAAATGG 218
| ||||.||..||.|....|||||..|||||||.|||||.||.|.
BL03422___nat 173 AAGCCT-TGCTGAACAATAAAAGGGGCGGTTTATGCTATGATTTGAACGC 221
BSNT_05289___ 219 TTTTCTTTATTTTGTCTTGCGTGAGGCTGGG--TTTCATGTGAAGCTCA- 265
|||||||||.|.|||..||...|| |||.|| |||| .|.|||
BL03422___nat 222 TTTTCTTTACTATGTGCTGACAGA-GCTCGGCTTTTC------CGTTCAC 264
BSNT_05289___ 266 ----TTCGAGGAACGG---TTTATGCAGGCGATCAAGAGGGATGGGCACT 308
|.||.||||||| ||.|||||...||.| |||..|||||.||
BL03422___nat 265 ATGGTCCGCGGAACGGTATTTAATGCAAAAGAGC---AGGCGTGGGCGCT 311
BSNT_05289___ 309 AGAAGGG-ACGCATGCTGCTGT-ATGGCTGTCTGCGGAAAACGGCGAT-- 354
||.||| |||||||..||.|| || |||||||.|| ||.|||
BL03422___nat 312 -GACGGGAACGCATGTCGCCGTAAT-----TCTGCGGGAA--GGTGATGA 353
BSNT_05289___ 355 ----TACCTCGTTGATATCGGCTTCGGCATCAACCTGGCGC-TCCAGCCG 399
||.||..|.||.|..||.|||||||||||||||.||| |.||.|||
BL03422___nat 354 AACCTATCTGCTGGACACTGGATTCGGCATCAACCTGCCGCTTGCACCCG 403
BSNT_05289___ 400 ATACCGCTTTCCGGAGAAACGGTACAGTCACCAGTCGGGTCATTCCGAAT 449
|.|||.|.||.||.|||.|.||.|..|||..|...||..|.|.|||.||
BL03422___nat 404 -TTCCGTTCTCAGGTGAACCTGTCCCCTCAAAAACAGGAGCTTACCGTAT 452
BSNT_05289___ 450 CA---AAAGAGAAGAGACAGA-AAAGGGCA--GCCATGTTCTGCTG--AT 491
|| ||| .|.||||.|| ||||||.| .|| |||| || ||
BL03422___nat 453 CAGGGAAA---CAAAGACGGATAAAGGGGATTACC---TTCT--TGAAAT 494
BSNT_05289___ 492 GGACAAGGGAGAAGGCTGGCAAATCGGGTACGCCTTTACTCT-------- 533
|||.||||||||.||.|||||.|||||.||.||.|||.|.||
BL03422___nat 495 GGATAAGGGAGATGGGTGGCAGATCGGCTATGCATTTTCGCTGACGCCAA 544
BSNT_05289___ 534 ----TGAAGAGAGTGATCTCGGTGATTTAGATAACA----TGAAGGA--C 573
||||| |.|||.|| ||| ||..||| |
BL03422___nat 545 TCGATGAAG----------CTGTGCTT------ACATGCGTGCGGGATGC 578
BSNT_05289___ 574 ATCATTCACTCTC-ATGAAAA---ATCTCCTTTTAACAAATCCCCGCTTG 619
| |.|.|| ||||.|| .||.||||||||.|||..||||||.|
BL03422___nat 579 A------ATTTTCGATGAGAAGGCGTCGCCTTTTAATAAAAACCCGCTCG 622
BSNT_05289___ 620 CCTCAAAGCTGACGCCGAGCGGAAGGATGGTCATGTCAGAGCGCCATTTT 669
|.||.||||||| .|..|||.|||..||.| |||||
BL03422___nat 623 CTTCCAAGCTGA----TAAAGGACGGAAAGTTA------------ATTTT 656
BSNT_05289___ 670 -ACGA--------TTCATGAAAACGGCAGTGACA---------TTCAAAA 701
|||| ||||..|| ||| |||| ||.|..|
BL03422___nat 657 GACGAAGGATCACTTCACAAA----GCA--GACAGGGGGCGGTTTGACGA 700
BSNT_05289___ 702 AAGTGACATTGGCCCTTCAGAATTTGAA-----GAGAAATT---AAA--- 740
||| ||.||.|||| ||| ||| |||
BL03422___nat 701 AAG---------------AGGATGTGAATGCAGGAG--ATTTCCAAACCA 733
BSNT_05289___ 741 --------TACTCATTTTTTG--TAA 756
.|.|||||||||| |.|
BL03422___nat 734 TTTTCGTTCATTCATTTTTTGACTGA 759
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