Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05299 and BL03414
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:24
# Commandline: needle
# -asequence dna-align/BSNT_05299___yvcD.1.5803.seq
# -bsequence dna-align/BL03414___yvcD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05299___yvcD-BL03414___yvcD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05299___yvcD-BL03414___yvcD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05299___yvcD
# 2: BL03414___yvcD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1556
# Identity: 1014/1556 (65.2%)
# Similarity: 1014/1556 (65.2%)
# Gaps: 196/1556 (12.6%)
# Score: 3018.0
#
#
#=======================================
BSNT_05299___ 1 GTGGGAAAACACACTTCTGAACAT----AAAAATCACGCACAAATTGTCC 46
||||||||..|||||||||||||| ||.|.||..| ||||||||
BL03414___yvc 1 GTGGGAAAGTACACTTCTGAACATCATAAAGATTCGAG----AATTGTCC 46
BSNT_05299___ 47 AGCTGCTTCAAGATGGACAATATTTTTTTCATAAAGGCTTGAAAGCGTAT 96
|||||.|.||||||||.||||||||||.|||||||||..|.|||||.||.
BL03414___yvc 47 AGCTGTTCCAAGATGGGCAATATTTTTATCATAAAGGGCTCAAAGCATAC 96
BSNT_05299___ 97 AAAGAGCGCAATCTAAAACGGGCAAGCAAACTGATTCAGCGCGCGGTTCA 146
|.||||||.|||.||...||.||.|||||.||.||.|||.|.|||.||..
BL03414___yvc 97 AGAGAGCGAAATTTATCCCGCGCGAGCAAGCTCATACAGAGAGCGATTTT 146
BSNT_05299___ 147 TTTGGAGCCGGA-------GGATTCAGAGATGCTTTCACAGCTTGCGGTC 189
|.|.||.||.|| ||| |||||.||.||.||||||||.
BL03414___yvc 147 TCTTGAACCTGAAAACACGGGA-------ATGCTGTCCCAACTTGCGGTT 189
BSNT_05299___ 190 ATTTATTCGGAAATGGGCCAGTATCAAGAGTCGAACGATCTTCTTGACTA 239
||||||.|||||||||||...|||||..|.||.|||||.|||.|.||||.
BL03414___yvc 190 ATTTATACGGAAATGGGCTTTTATCAGCAATCAAACGAACTTTTGGACTT 239
BSNT_05299___ 240 TATCATG--GCAAATCTGGAGGCCGAAATGCCGGAGTGCCATTACTTTAA 287
||||.|| |.|.||| .|.|...|||||.|.||.|||.|.||.|||||
BL03414___yvc 240 TATCCTGAAGAACATC--AACGAAAAAATGACTGAATGCTACTATTTTAA 287
BSNT_05299___ 288 AGCGAATAACTTTGCCCATCTGGGGCTCTTCCAGGAAGCTTATAAAGAAG 337
||||||.||||.|||.||.||.||.||.||.||.||.||.|||||||..|
BL03414___yvc 288 AGCGAACAACTATGCGCACCTCGGTCTTTTTCAAGAGGCCTATAAAGCGG 337
BSNT_05299___ 338 CGGCCGCTTATTCTGATGCGGACCCGGATGGTGAATTCGCCGAAGAAAA- 386
|||...||||||...|.|..||.|||||.||.||.|||..|||.|||||
BL03414___yvc 338 CGGAGACTTATTTAAAGGAAGATCCGGACGGCGAGTTCAGCGAGGAAAAT 387
BSNT_05299___ 387 -CGATAGTCTGCTTGATTTGCTCGATTTAGGAGACGACGGCATTGAGG-- 433
|| .|| |||||||||||..|.|||.|.|||||.||.| .|.|||
BL03414___yvc 388 GCG-GAG-CTGCTTGATTTATTGGATATGGGAGAGGAAG---ATCAGGGC 432
BSNT_05299___ 434 -ATTCGTTGTATGATCAGGATGAACTGCTGGTGAAACAGGATCGGGCAAA 482
|||||..||..||||||||.||.|||.|..||||||||||||||||.||
BL03414___yvc 433 TATTCGCAGTTCGATCAGGACGACCTGATTCTGAAACAGGATCGGGCCAA 482
BSNT_05299___ 483 GTCATTGCTGGAAAGCGGCCAGCTTGCTGAAGCGGTTGCGGCGCTTGAGG 532
.|||.|||||||||..||.||||||...|||.||.|.|||..||||||.|
BL03414___yvc 483 ATCACTGCTGGAAAATGGACAGCTTCAGGAATCGATCGCGATGCTTGAAG 532
BSNT_05299___ 533 AAATCACAGCTGAATATCCGGAGCTTTGGTCAGCATACAACAATCTCGCG 582
||||.|...|.||.||.||.|||.|||||||.||.||.||||||||.||.
BL03414___yvc 533 AAATTATTTCCGATTACCCTGAGTTTTGGTCGGCTTATAACAATCTTGCA 582
BSNT_05299___ 583 CTTGCCTATTTCTATTCAGGAAACGTTGTAAAAGCGAAGCAAAC--CGCT 630
||.||.||.||.|||.|.||..|||||...|||||.| |||| ||.|
BL03414___yvc 583 CTCGCATACTTTTATGCCGGGGACGTTCAGAAAGCCA---AAACGACGGT 629
BSNT_05299___ 631 TATGAAGTGCTTTCTCATAA-TGAAGGAAATCTTCACGC-CTTATGCAAT 678
|.|.|.|..|||....|.|| |.|.|||||.||.||.|| ||| ||||||
BL03414___yvc 630 TTTTACGGTCTTGGAAAAAAGTCATGGAAACCTGCATGCGCTT-TGCAAT 678
BSNT_05299___ 679 CTTCTCGTTTTCTACTATTATGAAAGAGAAGACGAAAAAGT---GGCG-- 723
|||||..||||.||..|.||||||.||...|||||.||.|| ||||
BL03414___yvc 679 CTTCTTATTTTTTATCACTATGAACGACGGGACGATAAGGTCGAGGCGCT 728
BSNT_05299___ 724 ----GAATTGAGTGATCAGCTCTCCAATGTCTATCCGATGCTATTGGAGC 769
||| |||||.||.|||.|.|||||||||||.||.||||
BL03414___yvc 729 TTCCGAA---------CAGCTTTCAAATATTTATCCGATGCTTTTTGAGC 769
BSNT_05299___ 770 AGCGTTATAAATTGGGTGCTACCTTGGCACTTGTCGGCCGCTACGAGATC 819
|..|.|||||..|.|||||.||..|.||.|||||||||||.|||||..||
BL03414___yvc 770 AAAGGTATAAGCTCGGTGCCACGCTAGCCCTTGTCGGCCGATACGATCTC 819
BSNT_05299___ 820 GGATATAAATGGCTCAAATCATTATATAAAATCGGCTTTGAAGGTGACGA 869
||.|.|||||||||.||||||.|.||....||.||.||||||||.||.||
BL03414___yvc 820 GGGTTTAAATGGCTGAAATCACTCTACCGCATGGGATTTGAAGGGGATGA 869
BSNT_05299___ 870 CACCTTCTTTTACTGGCTTTCATGCTCTGCTTATTTTACGGGACATACCG 919
.|||||.|.||||||||||.|.|||||.|||||||..||||| |||
BL03414___yvc 870 GACCTTTTATTACTGGCTTGCCTGCTCGGCTTATTACACGGG-----CCG 914
BSNT_05299___ 920 -----ACTTTGCCGAGACGATCTGGA--GAAAAGTCGAGTCGC------A 956
|.|||||| ||.||||.| ||||| ||..|| |
BL03414___yvc 915 CGTTCAATTTGCC----CGGTCTGTATGGAAAA----AGATGCAGGAAGA 956
BSNT_05299___ 957 ATATCCCGGCGAAGACCGCCCGGCGCCTTGGATTGAGCGGAGGGA----A 1002
.|||||.|..||.|.||||..||.|||.||||..||.||||.||| |
BL03414___yvc 957 GTATCCGGATGACGCCCGCATGGAGCCGTGGAAAGAACGGAAGGAAAAGA 1006
BSNT_05299___ 1003 GCTCT-TCCTTC-ATCTGTGGAACAGCGTCTCGCAGCCTATTATATCAGC 1050
|..|| |||..| |.|..|.||..||||.||.||.||.||||||||||||
BL03414___yvc 1007 GACCTGTCCAGCGACCGCTCGAGGAGCGCCTTGCCGCATATTATATCAGC 1056
BSNT_05299___ 1051 AGCACAAAGGGAGAAACAGAGCATCTTGAAGCGG----TGATACGCTCAA 1096
.|.|.|||.||.||||.||..||.||..|||||| |||| |||.
BL03414___yvc 1057 GGAAGAAAAGGGGAAAAAGCCCAGCTGAAAGCGGTGCTTGAT----TCAC 1102
BSNT_05299___ 1097 AGA--GAATAACCGCTCCTTTTGAAAATCATTTTGTAAAGC---TGCTTC 1141
||| |.|.||.|| ||.||||||.||||.|||||.|..| |||||
BL03414___yvc 1103 AGATGGCAAAAACG--CCGTTTGAAGATCAGTTTGTCAGACTTGTGCTT- 1149
BSNT_05299___ 1142 TAAATGGAGATTCTGGGGCTGCTGACGT---TTCAGAGGATGCACTTTTC 1188
||...|||.| |.|.|||.|.||| ||||.|.||.||.||..|.
BL03414___yvc 1150 TACGGGGAAA-----GCGGTGCAGCCGTTGATTCAAAAGACGCGCTACTT 1194
BSNT_05299___ 1189 GCCTATCA-AACGGTCAAA--CTATTAGAGCAAGCTGAAAAAGAAGAGAT 1235
||.|| || .||.| |||| |.||| ||.|||||.||..|....|.|||
BL03414___yvc 1195 GCTTA-CAGGACTG-CAAAAGCGATT-GAACAAGCGGATCAGTCGGCGAT 1241
BSNT_05299___ 1236 GAAAACA-GAAGTCATGAGCTGCTGGGTTTTCCATGTCATCCAGCAAATT 1284
| .|.|| ||.|.||||.|||..|||.|||||||||||||.|||||.||.
BL03414___yvc 1242 G-GAGCAGGAGGCCATGTGCTTTTGGATTTTCCATGTCATTCAGCAGATC 1290
BSNT_05299___ 1285 CGTGCAGTTGC-----TCCGTTGAAAAATGAGAAAGGCTGG---GCAGCA 1326
.|.|| ||.| ||.|.||||||||| ..|||.|| ||.|||
BL03414___yvc 1291 AGGGC--TTACGGGCTTCAGCTGAAAAATG---CCGGCGGGCTTGCGGCA 1335
BSNT_05299___ 1327 GCCATCTGTTATATTTGGAA-----------AGAAGCCCATGGCAAGCAA 1365
||.||||.|||.|||||||| ||.|||...||.||| ||
BL03414___yvc 1336 GCGATCTATTACATTTGGAAGACGGAGCATCAGGAGCGTTTGACAA--AA 1383
BSNT_05299___ 1366 GACACGAAAAAAGACACAGCGGCCCG-----ATTCGGC----ATCTCTCC 1406
| .||||| ||| |||...| |||.| ||
BL03414___yvc 1384 G--CCGAAA--------------CCGCTAAAATTTTCCAAATATCGC-CC 1416
BSNT_05299___ 1407 GGCAACTTTGACG-----AAATATATGAA-ATATATT-GATGATATTCTA 1449
|| |||| ||| .|||||| .||.||| .|.||...|||
BL03414___yvc 1417 GG-------GACGCTTTCAAA-GTATGAACGTACATTAAAAGAGCATCT- 1457
BSNT_05299___ 1450 GAATAG 1455
||||
BL03414___yvc 1458 --ATAG 1461
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