Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05308 and BL03410
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:24
# Commandline: needle
# -asequence dna-align/BSNT_05308___hisH.1.5803.seq
# -bsequence dna-align/BL03410___hisH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05308___hisH-BL03410___hisH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05308___hisH-BL03410___hisH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05308___hisH
# 2: BL03410___hisH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 677
# Identity: 463/677 (68.4%)
# Similarity: 463/677 (68.4%)
# Gaps: 76/677 (11.2%)
# Score: 1506.5
#
#
#=======================================
BSNT_05308___ 1 ATGATCGGCGTGATAGATTACGGAATGGGGAATTTATACAGTGTCTCAAA 50
||||||||.||.|||||||||||||||||.||..|.|||||.||.||.||
BL03410___his 1 ATGATCGGTGTCATAGATTACGGAATGGGAAACCTGTACAGCGTTTCTAA 50
BSNT_05308___ 51 GGCGCTTGAACGTGTCGGCGTGCCGTATTTTGTTTCTGAAAAGCCGGAGG 100
.|||||||||||..|.|..|..||.||||||||.||.||..|.|||||.|
BL03410___his 51 AGCGCTTGAACGGATTGATGCCCCTTATTTTGTGTCCGAGCATCCGGATG 100
BSNT_05308___ 101 AGCTGAA-AGA------AGCTGAT-GCCTTCATTTTGCCGGGAGTCGGTT 142
|.||||| ||| |||| || .|||| |||||||||||..
BL03410___his 101 AACTGAAGAGAGCGGACAGCT-ATATCCTT-------CCGGGAGTCGGCG 142
BSNT_05308___ 143 CATTTGGAGACGCGATGGACAATTTGCGCTACACGAA--GCTTGATCA-A 189
|.|||.|.||.||.|||||.|.|||...|.| ||| ||.|||..| |
BL03410___his 143 CTTTTCGGGATGCAATGGAGATTTTAACCGA---GAACGGCCTGAAAACA 189
BSNT_05308___ 190 TTGATTCACGATATGGTCTCA---GAGGGAAGGCTGCTTCTAGGGATCTG 236
||.|||||.|.| |.|.|| ||.||||..|..|||||.||.||.||
BL03410___his 190 TTTATTCAAGCT---GCCGCAAACGAAGGAAAACCTCTTCTCGGCATATG 236
BSNT_05308___ 237 CCTCGGCATGCAGCTTTTATTTGAAGAAAGCGAAGAAAACGGCACCGCTT 286
||||||||||||||||||.||||||||||||||||||.|||| .||.|
BL03410___his 237 CCTCGGCATGCAGCTTTTGTTTGAAGAAAGCGAAGAACACGG---GGCGT 283
BSNT_05308___ 287 C---AGGACTCGGGCTGTTAAAAGGAAAAGCAGTCAGGCTGAAAG-CAGA 332
| |||.|||||.|||||.||||||||||..||.|..||||||| |.|
BL03410___his 284 CAGAAGGGCTCGGCCTGTTGAAAGGAAAAGTCGTTAAACTGAAAGACTG- 332
BSNT_05308___ 333 AGATGAAAAAGGAAA-CAAGC-TGAAGGTTCCGCATATGGGCTGGAATCG 380
.|||.||...||||| | || |.||.||.||.||.|||||||||||||.
BL03410___his 333 TGATCAAGCGGGAAATC--GCTTAAAAGTGCCTCACATGGGCTGGAATCT 380
BSNT_05308___ 381 TCTTTCCTTTCATAA--------CGAATCTCCGCTGCTGACTAAAACAGA 422
|| ||| || |||.||.|||||..||.|.|||.|..|
BL03410___his 381 TC-------TCA-AAGTCCACCGCGACTCGCCGCTTTTGCCAAAAGCGAA 422
BSNT_05308___ 423 ACAAGGCTACGCTTACTTCGTTCATTCCTATTACATTGACGGGATGGAGG 472
|.||||.|.|||.||.|||||||||||.|||||..|...|||.||.||.|
BL03410___his 423 AGAAGGATTCGCGTATTTCGTTCATTCGTATTATGTCAGCGGAATCGAAG 472
BSNT_05308___ 473 AGGACTCGCTCCTGGCAAGCACCGATTATGGTGTGCGAGTGCCTGCTGTA 522
||||..|..|.||.||||||.||||.||.||||||.|.||.||.|||||.
BL03410___his 473 AGGAAGCTTTGCTTGCAAGCGCCGAATACGGTGTGTGTGTACCCGCTGTC 522
BSNT_05308___ 523 GTCGGAAAAAGAAACGTCTTCGGCGCCCAATTTCATCCGGAAAAAAGCAG 572
|||||.....|.||.||.|.|||.|||||.||.|||||||||||.|||||
BL03410___his 523 GTCGGTCTTGGCAATGTATACGGGGCCCAGTTCCATCCGGAAAAGAGCAG 572
BSNT_05308___ 573 CACGGTCGGAATGTCTATTTTA---------ACCCAATTTACGAAAATGG 613
.||||||||.||||..||.||| |..||.|||||
BL03410___his 573 TACGGTCGGCATGTTGATCTTAGAGCGGTTCAAGCAGTTTAC-------- 614
BSNT_05308___ 614 CAGCAA-AACAGAAGGTGAAAAAATGA 639
.||| ||||||||||||||||||||
BL03410___his 615 --ACAAGAACAGAAGGTGAAAAAATGA 639
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