Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_05326 and BL03402

See Amino acid alignment / Visit BSNT_05326 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:26
# Commandline: needle
#    -asequence dna-align/BSNT_05326___lgt.1.5803.seq
#    -bsequence dna-align/BL03402___lgt.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05326___lgt-BL03402___lgt.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05326___lgt-BL03402___lgt.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05326___lgt
# 2: BL03402___lgt
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 837
# Identity:     609/837 (72.8%)
# Similarity:   609/837 (72.8%)
# Gaps:          51/837 ( 6.1%)
# Score: 2207.0
# 
#
#=======================================

BSNT_05326___      1 ATGAATGAAGCGATAGAACCACTCAATCCGATAGCATTTCAGCTGGGGCC     50
                     |||||||||.||||.||||||.|.||||||||.||.|||||.||||||||
BL03402___lgt      1 ATGAATGAAACGATTGAACCATTAAATCCGATTGCTTTTCAACTGGGGCC     50

BSNT_05326___     51 GTTAGCCGTCCATTGGTACGGAATCATTATCGGTCTCGGTGCTTTGCTCG    100
                     |.|.||.||||||||||||||.||.||.|||||.||.||.||||||||||
BL03402___lgt     51 GATCGCTGTCCATTGGTACGGTATTATCATCGGCCTTGGCGCTTTGCTCG    100

BSNT_05326___    101 GGCTGTGGATTGCGATGAGGGAAAGTGAAAAACGGGGGCTGCAGAAAGAT    150
                     |..|||||.|.||..|.||||||.|.|||....||||.|||||.|||||.
BL03402___lgt    101 GTTTGTGGCTGGCAGTCAGGGAAGGCGAACGGAGGGGACTGCATAAAGAC    150

BSNT_05326___    151 ACGTTTATTGATCTTGTCCTGTTTGCCATTCCAATTGCGATTATTTGCGC    200
                     ||.|||.|.|||.|.||.||.|||||.|||||.|||||.|||.|.||.||
BL03402___lgt    151 ACCTTTGTCGATTTGGTGCTTTTTGCGATTCCGATTGCCATTTTATGTGC    200

BSNT_05326___    201 GCGAATTTATTACGTTGCCTTTGAATGGGACTATTATGCGGCACATCCGG    250
                     ..||...|||||.||....|||.||||||..|||||....|.||||||.|
BL03402___lgt    201 AAGAGCATATTATGTCATTTTTCAATGGGGTTATTACAGTGAACATCCTG    250

BSNT_05326___    251 GAGAAATCATTAAGATTTGGAAGGGCGGCATTGCCATTCATGGCGGATTA    300
                     ...|.||.|||.|.||.|||||.||||||.||||.||||||||||||.|.
BL03402___lgt    251 ACCAGATTATTCAAATATGGAACGGCGGCCTTGCGATTCATGGCGGACTG    300

BSNT_05326___    301 ATCGGCGCCATTTTAACGGG------TTATGTGTTTTCGAGAGTGAAAAA    344
                     |||||||||.|..|.|||||      |||||      |||.|||.||...
BL03402___lgt    301 ATCGGCGCCGTGCTGACGGGAATCATTTATG------CGAAAGTCAAGGG    344

BSNT_05326___    345 CCTTTCGTTCTGGAAGCTTGCGGACATTGCCGCGCCCAGCATTTTGCTCG    394
                     .||||||||.||||||||.||.||.||.||.||.||.||||||.||||.|
BL03402___lgt    345 GCTTTCGTTTTGGAAGCTGGCTGATATCGCTGCTCCAAGCATTCTGCTTG    394

BSNT_05326___    395 GCCAGGCGATCGGGCGCTGGGGGAACTTCATGAATCAGGAAGCGCACGGC    444
                     |.|||||||||||.||||||||.|||||.|||||.||||||||||||||.
BL03402___lgt    395 GTCAGGCGATCGGACGCTGGGGAAACTTTATGAACCAGGAAGCGCACGGT    444

BSNT_05326___    445 GAGGCTGTCAGCAGAGCCTTTTTAGAAAACCTGCACCTGCCTGAATTTAT    494
                     |||||.|||...|||||.||||||||||||||.|||||||||||.|||||
BL03402___lgt    445 GAGGCGGTCTCAAGAGCGTTTTTAGAAAACCTCCACCTGCCTGATTTTAT    494

BSNT_05326___    495 CATCAATCAAATGTATATCAATGGGCAATATTATCATCCTACTTTTTTAT    544
                     ||||||||||||||||||..|.||.|||||.||.||.|||||.|||||.|
BL03402___lgt    495 CATCAATCAAATGTATATTGACGGACAATACTACCAGCCTACCTTTTTGT    544

BSNT_05326___    545 ATGAATCACTATGGAGCTTTGTCGGCGTCATTGTTTTATTGCTGCTGC--    592
                     |||||||.||.|||||||||...||.|||.|||||      |||||.|  
BL03402___lgt    545 ATGAATCGCTGTGGAGCTTTACGGGAGTCGTTGTT------CTGCTTCTT    588

BSNT_05326___    593 ----GCAGAGCGAATTTGCGTAGAGGCGAGATGTTCTTGATCTATATCAT    638
                         |.|.|||||||||....||||||||..|||||||.|||||..|.||
BL03402___lgt    589 TTAAGAAAAGCGAATTTAAAGAGAGGCGAACTGTTCTTAATCTACGTTAT    638

BSNT_05326___    639 TTGGTATTCAATCGGAAGATACTTTATTGAAGGAATGCGGACTGACAGCT    688
                     |||||||||.||.|||.|.||||||||.|||||..|..|.||.|||||..
BL03402___lgt    639 TTGGTATTCGATGGGACGCTACTTTATCGAAGGCCTTAGAACGGACAGTC    688

BSNT_05326___    689 TAATGCTGACTGATTCACTTCGCATCGCTCAGGTGATTTCAATCGTATTA    738
                     |.||||||||.||....|||||||||||.|||||.|||||.||||||.|.
BL03402___lgt    689 TGATGCTGACGGAGAATCTTCGCATCGCACAGGTTATTTCGATCGTACTG    738

BSNT_05326___    739 ATTGTTTTGGCTGTG--GCAGCCATCAT---CTTCAGACGCGTCAAGGGA    783
                     ||..|     |||||  ||.||..|.||   ||.||||||..||||.|  
BL03402___lgt    739 ATCCT-----CTGTGCAGCTGCGCTGATAGCCTACAGACGTTTCAAAG--    781

BSNT_05326___    784 TACTCGAAG-GAG------CGGTACGCGGA---GTAG    810
                          |.|| |||      |||||...|||   ||||
BL03402___lgt    782 -----GCAGAGAGATTAAACGGTATCAGGAGATGTAG    813


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.