Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05342 and BL03397
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:27
# Commandline: needle
# -asequence dna-align/BSNT_05342___yvlB.1.5803.seq
# -bsequence dna-align/BL03397___yvlB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05342___yvlB-BL03397___yvlB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05342___yvlB-BL03397___yvlB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05342___yvlB
# 2: BL03397___yvlB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1134
# Identity: 802/1134 (70.7%)
# Similarity: 802/1134 (70.7%)
# Gaps: 75/1134 ( 6.6%)
# Score: 2659.5
#
#
#=======================================
BSNT_05342___ 1 ATGATGCAAGAAAAGGAACGAATCCTTAAGCTT-GTTGAGGAAGGAAAGC 49
||||.|||.||.||.|||||||| .||||..|| ||.|||||||||||||
BL03397___yvl 1 ATGAAGCATGAGAAAGAACGAAT-TTTAAAATTGGTCGAGGAAGGAAAGC 49
BSNT_05342___ 50 TTACAGCACAAGAAGCTTTGACACTGATTGAAAAGCTTGACAG-CGACTA 98
|..|.|||.||||.||..|||..|||||.|||||.||||| || .|||||
BL03397___yvl 50 TGTCTGCAAAAGAGGCGCTGATCCTGATCGAAAAACTTGA-AGAAGACTA 98
BSNT_05342___ 99 CAAGGAAAAAGAAGAG-AAAATCACAGCGCTCTC-----AGTTCACGTTC 142
||||||||..| |||| ||..|.|||||.||.|| |..||| ||.
BL03397___yvl 99 CAAGGAAACCG-AGAGCAAGGTGACAGCCCTGTCTGAGGATGTCA--TTG 145
BSNT_05342___ 143 ATGACGAGGAAGAGCCATTTACAACGGCAAAAAAAGAAAG---CGGCAAG 189
||...||||| |.|.||||.|| ||||.||.|||| || |||
BL03397___yvl 146 ATTCGGAGGA-----CTTCTACAGCG--AAAAGAAAAAAGAACCG--AAG 186
BSNT_05342___ 190 CCGTCTTTAGGAGCCAAGCTGTTTGACTGGATTGATTCTGCTGTGAAAAA 239
||.||..|.||..|.||.|||||.||.|||||||||.|.|||||.|||||
BL03397___yvl 187 CCTTCGATCGGTTCAAAACTGTTCGAATGGATTGATACCGCTGTAAAAAA 236
BSNT_05342___ 240 GGTCAAGGAAGTTGACCTTGATTTAAACTTTGGCCATGCGTATGATGTTC 289
.||.||.||||..|||.|.|||||.||.||.||.||..||||.|||||.|
BL03397___yvl 237 AGTAAAAGAAGCAGACTTGGATTTGAATTTCGGGCACTCGTACGATGTCC 286
BSNT_05342___ 290 AGCACATTTTTCAATTTAAAGATACTGACTTTTCCAGTGTTGAGCTGCAA 339
||||.||.||.||.||||||||.|||||.|||||.|.|.|.||..|.||.
BL03397___yvl 287 AGCATATATTCCAGTTTAAAGACACTGATTTTTCGACTCTGGATATTCAG 336
BSNT_05342___ 340 ATTGCGAATGGCAGCGTGAATATCGTCCCTTGGGAAGATGACGATATCAG 389
.||||.||.||||||||.||..|.||.||.|||...|||..|||.|||||
BL03397___yvl 337 CTTGCCAACGGCAGCGTCAACCTTGTACCATGGAGCGATTCCGACATCAG 386
BSNT_05342___ 390 AGCGGAATGCCAGGCGAAGGTATATCGCGCTGACAGCCAGGATGCGGCGA 439
||..|||||||||||.||.||.||.||.|||||.|..|||||||..||.|
BL03397___yvl 387 AGTCGAATGCCAGGCAAAAGTGTACCGGGCTGAAAATCAGGATGAAGCAA 436
BSNT_05342___ 440 GACACGCATTTCTTCAGCATATTGAATGTGAAATCAAAGGAAATAAATTT 489
|.||.||.|||||.||||||||.||.||.|...|..||||..||||.||.
BL03397___yvl 437 GGCAGGCTTTTCTCCAGCATATCGACTGCGGTGTGGAAGGCGATAAGTTC 486
BSNT_05342___ 490 TTTATCCGTACTGAGAAAAAGACGATGAAAACGAATGTCACTTTGTATAT 539
.|.||||||||.||||||||.||||||||.||.||..|.||..|.|||||
BL03397___yvl 487 ATGATCCGTACCGAGAAAAAAACGATGAAGACCAACCTTACCGTCTATAT 536
BSNT_05342___ 540 TCCTCAGAAGGAGTATGATAAGATTCGGGTGAAGCTGTTTAACGGTCCGG 589
.||..|.||.|||||.|..||.||.||..|.||.|||||||||||.||||
BL03397___yvl 537 ACCGGACAAAGAGTACGGCAAAATCCGCTTTAAACTGTTTAACGGCCCGG 586
BSNT_05342___ 590 TCAGAGGGGAACATTTACATGTAAAAGAGTTCTCAGCGAAAACGACAAAC 639
|||||||||||||||||.|.|||||||||.|.||.||.||||||||.|||
BL03397___yvl 587 TCAGAGGGGAACATTTAAACGTAAAAGAGCTGTCCGCCAAAACGACGAAC 636
BSNT_05342___ 640 GGCGTGCTGTCGTTCTC-GCACTTAACAGCCGAAAAAGC--CATAGCTGA 686
||||||||||||||||| ||.| |.||.||.|.|||||| |||.| ||
BL03397___yvl 637 GGCGTGCTGTCGTTCTCTGCTC-TCACGGCAGGAAAAGCTTCATTG--GA 683
BSNT_05342___ 687 AACGGCCAACGGGCAAATTAAACTCGCCAGCCACAGCTGCGGAACGATAG 736
|||.||.||.||.|||||.|||||.|||..|||.|..||||||..|||.|
BL03397___yvl 684 AACTGCAAATGGACAAATCAAACTAGCCGACCATACTTGCGGAGAGATTG 733
BSNT_05342___ 737 AAGCGGAAACCATTAACGGATTGATCGATCTCCGAGGGAAAAGCGAATCC 786
|||||||||||||.||.|||||||||||.||...|||...|.||||..|.
BL03397___yvl 734 AAGCGGAAACCATCAATGGATTGATCGACCTTAAAGGTTCATGCGAGGCG 783
BSNT_05342___ 787 ATTGACGTTCAAAGCTTTAACGGAAATATTGCGATTAACGTAACAG---- 832
.|||||.|.||.|||||||||||.|||||.||| |.|||||
BL03397___yvl 784 CTTGACCTGCAGAGCTTTAACGGCAATATCGCG------GCAACAGTCAA 827
BSNT_05342___ 833 -AATCAG-ACTGCCG--CTCCATTTATGCAAAAACAACGACTGGAAGTGT 878
||||.| ||||||| |..|| ||||..|||||||||||||||||.||
BL03397___yvl 828 AAATCCGCACTGCCGGACGGCA--TATGTGAAAACAACGACTGGAAGCGT 875
BSNT_05342___ 879 GGAGCTTGCGA---TTCC---GGACGATCT-CGCAGTGAAGGCAGAGCTG 921
.|||.| || |||| ||| || |||.||.|..||.||||||
BL03397___yvl 876 AGAGTT---GAATGTTCCCCGGGA----CTGCGCTGTTACAGCGGAGCTG 918
BSNT_05342___ 922 AAAAGCAATCTTGGTTCGCTGTCCCATGA--ATTAATGGATGTTGAGATG 969
|||||||||||.|||||.|||||.||||| .||.| ||||..||.||.
BL03397___yvl 919 AAAAGCAATCTCGGTTCTCTGTCTCATGATCTTTCA--GATGCAGAAATT 966
BSNT_05342___ 970 CTGAAGGAAAAAAATGATACCATTCAAAAAGAAATGATGTTCACTT---- 1015
.|.|||||||||||.||.||.||.||.||.|||||| .||.|
BL03397___yvl 967 TTAAAGGAAAAAAACGAGACAATCCAGAAGGAAATG-----TACCTAAAA 1011
BSNT_05342___ 1016 -CAAATCAGGCACATGATCAAAACATCACCGTCTTCTCAGAATCACTAAC 1064
|||||||....||||||||.|.|||.|||||.||.|..|||||....||
BL03397___yvl 1012 GCAAATCAAAATCATGATCATAGCATGACCGTGTTTTTGGAATCGAAGAC 1061
BSNT_05342___ 1065 AGGCGCCATCAAACTAAAGTACTCACAGAGGTGA 1098
|||..|.|||.|..||||..|..|||||..||||
BL03397___yvl 1062 AGGATCGATCCATTTAAACCATACACAGGAGTGA 1095
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