Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05343 and BL03396

See Amino acid alignment / Visit BSNT_05343 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:27
# Commandline: needle
#    -asequence dna-align/BSNT_05343___yvlA.1.5803.seq
#    -bsequence dna-align/BL03396___yvlA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05343___yvlA-BL03396___yvlA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05343___yvlA-BL03396___yvlA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05343___yvlA
# 2: BL03396___yvlA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 372
# Identity:     214/372 (57.5%)
# Similarity:   214/372 (57.5%)
# Gaps:          90/372 (24.2%)
# Score: 544.0
# 
#
#=======================================

BSNT_05343___      1 TTGAACCG-TAATCAA-GCTATTATTGCATCACTTTGTTATTTCAGTGTG     48
                     .|||  || .||.||| ||..|.|||.|.|||.||||||||||.|||||.
BL03396___yvl      1 ATGA--CGAGAAACAACGCGCTGATTTCTTCAATTTGTTATTTTAGTGTT     48

BSNT_05343___     49 TTCATTGCGCCAATCATTGTGCCGATTGTCGCTTATTTTGTTGTAAATGA     98
                     ||..||||.||..|.|||.||||.||.|..||.||||||.|...|.||||
BL03396___yvl     49 TTTTTTGCCCCGCTTATTTTGCCAATCGCAGCGTATTTTATAACAGATGA     98

BSNT_05343___     99 GAAAGAAAC-AAAACGCCATGCGATACGCTCCCTTATTTCTCACATAGTT    147
                     ..||||||| ||||.| ||||||||.||.||.||||||||.||.||..||
BL03396___yvl     99 TCAAGAAACGAAAAAG-CATGCGATGCGTTCGCTTATTTCGCATATTATT    147

BSNT_05343___    148 CCGTTTGTCGGCTGGCTGT--TCCTTTTTATTGCTTTACTTGGCGGAGCC    195
                     ||||||.|..||     ||  ||    .|||||           |.|||.
BL03396___yvl    148 CCGTTTATAAGC-----GTAGTC----ATATTG-----------GCAGCA    177

BSNT_05343___    196 GTTGCGATTGATG-GAGACAGCTTGCTTCCTGTATTTGTAATCATTGGGG    244
                     |..|||||  |.| |..||     ||||            ||| ||.||.
BL03396___yvl    178 GGCGCGAT--AAGCGGTAC-----GCTT------------ATC-TTTGGT    207

BSNT_05343___    245 GA--GCGGTTATTT--------ATTTCTT-------GGTTGTCATT----    273
                     ||  ||||||||||        .||||.|       |||| ||.||    
BL03396___yvl    208 GACGGCGGTTATTTGGCGGTCATTTTCATGATCGGAGGTT-TCGTTTTTT    256

BSNT_05343___    274 --GGCATTATCA---------------TTTGGAATGTGATTCAGGGCATT    306
                       ||.||.||||               |.|||||.||..||||.||.|||
BL03396___yvl    257 TCGGGATCATCAGTTTGATTATTGTGGTCTGGAACGTAGTTCAAGGGATT    306

BSNT_05343___    307 AAGGTCCTGCGTGCA-GCATAA    327
                     ||..|.|||..| || ||.|||
BL03396___yvl    307 AAAATGCTGACT-CAGGCCTAA    327


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