Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00701 and BL03389

See Amino acid alignment / Visit BSNT_00701 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:20
# Commandline: needle
#    -asequence dna-align/BSNT_00701___ycsA.1.5803.seq
#    -bsequence dna-align/BL03389___ycsA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00701___ycsA-BL03389___ycsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00701___ycsA-BL03389___ycsA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00701___ycsA
# 2: BL03389___ycsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1118
# Identity:     758/1118 (67.8%)
# Similarity:   758/1118 (67.8%)
# Gaps:         118/1118 (10.6%)
# Score: 2396.5
# 
#
#=======================================

BSNT_00701___      1 ATGAAACAATTCGAGATTGCGGCA--ATACCGGGATACGGTGTAGGAAAA     48
                     ||||||..||||.|.|||||  ||  |||||.||..||||.|||||.|||
BL03389___ycs      1 ATGAAAGTATTCAACATTGC--CAGCATACCCGGTGACGGGGTAGGGAAA     48

BSNT_00701___     49 GAGGTTGTAGCGGCTGCTGAGAAAGTGCTTCAT-ACAGCCG---CTGAGG     94
                     ||.||.|||.|.|||||  |.||.|.|.||  | |.|||.|   |.||.|
BL03389___ycs     49 GAAGTCGTACCTGCTGC--ACAACGAGTTT--TGAAAGCGGTTTCGGATG     94

BSNT_00701___     95 TACACGGAGGTTTGTCATTCTC-ATTCACGGCTTTTCCATGGAGCTGTGA    143
                     |.|||||.||..|.||||| || .||.||||..|||||||..||||||||
BL03389___ycs     95 TTCACGGGGGACTCTCATT-TCGGTTTACGGAGTTTCCATACAGCTGTGA    143

BSNT_00701___    144 TTATTACTTGGAGCACGGCAAAATGATGCCCGAAGA-----TGGAATACA    188
                     .|||||.|||||.|||||..||||||||||.||.||     ||||..|  
BL03389___ycs    144 GTATTATTTGGAACACGGGGAAATGATGCCTGATGACGGCTTGGAGCA--    191

BSNT_00701___    189 TACGCTTACTCAATTTGA-AGCGGTTTTTTTGGGAGCCGTCGGAAATCCG    237
                        |||.|...|.||.|| |||...|||.||||| ||.||.||||| |.|
BL03389___ycs    192 ---GCTGAAAGAGTTCGACAGCATCTTTCTTGGG-GCTGTAGGAAA-CAG    236

BSNT_00701___    238 -AAGCTGGTTCCCGATCATATATCGTTATGGGGACTGCTGCTGAAAATCC    286
                      |||||.||.|||||.|||||.||..|.|||||.|||||..|.|||||||
BL03389___ycs    237 CAAGCTTGTCCCCGACCATATTTCCCTGTGGGGGCTGCTCATTAAAATCC    286

BSNT_00701___    287 GGAGGGAGCTTGAGCTTTCCATTAATATGAGACCCGCCAAACAAATGGCA    336
                     |..|.||..||||.|....|||.||.||.|||||.||.|||.|..||..|
BL03389___ycs    287 GCCGCGAATTTGAACAGGTCATCAACATTAGACCTGCGAAATATTTGCAA    336

BSNT_00701___    337 GGCATTACGTCGCCGCTTCTGC--ATCCAAATGATTTTGA----CTTCGT    380
                     ||.||.|.|||.|||||  .||  |.|||||.|||||.||    ||| ||
BL03389___ycs    337 GGAATCAAGTCTCCGCT--GGCCAACCCAAAAGATTTCGATCTGCTT-GT    383

BSNT_00701___    381 GGTGATTCGCGAGAACAGTGAAGGTGAATACAG--TGAAGTCGGCGGGCG    428
                     .||.|   |.||.|||||||||||.||||||||  .||  ||||.||..|
BL03389___ycs    384 CGTCA---GGGAAAACAGTGAAGGGGAATACAGCTCGA--TCGGAGGCAG    428

BSNT_00701___    429 CATTCACAGAGGCGATGATGAAATCGCCATCCAGAATGCCGTGTTTACGA    478
                     .||...|||.|..||.||||||||||||||.||.||||||||.|||.|.|
BL03389___ycs    429 AATCTTCAGGGATGAAGATGAAATCGCCATTCAAAATGCCGTTTTTTCAA    478

BSNT_00701___    479 GAAAAGCGACAGAACGTGTCATGCGCTTTGCCTTCGAATTGGCG---AA-    524
                     ||||||.|.|.||..|.|..|||||||||||.||.||.||||||   || 
BL03389___ycs    479 GAAAAGGGGCGGAGAGGGCGATGCGCTTTGCTTTTGAGTTGGCGGCTAAG    528

BSNT_00701___    525 ---AAAACGGCGCAGCCATGTGACAAGCGCCACAAAGTCTAACGG---CA    568
                        ||||.|       |||||.||||||||.||||||||.|||||   |.
BL03389___ycs    529 CGGAAAAAG-------CATGTCACAAGCGCAACAAAGTCGAACGGAATCG    571

BSNT_00701___    569 TTTA-TCATGCGATGCCGTTTTGGGATGAAGTCTTTCAGCAGACAG----    613
                     |||| |||    |||||.||||||||||||||||||.||.|.||.|    
BL03389___ycs    572 TTTATTCA----ATGCCTTTTTGGGATGAAGTCTTTGAGAACACGGCAAA    617

BSNT_00701___    614 --------CCGCTGATTATAGCGGAATCGAAACATCATCTCAGCATATTG    655
                             |||.| ||||..||.||.|||           |||||.||||
BL03389___ycs    618 AGACTACCCCGAT-ATTACCGCAGATTCG-----------CAGCACATTG    655

BSNT_00701___    656 ATGCGCTGGCCGCTTTTTTTGTGACGCGTCCGGAAACGTTTGATGTCATT    705
                     |.||||||.|.||.||||||||.|||.|.||.||.|.|.||||.||||||
BL03389___ycs    656 ACGCGCTGTCGGCCTTTTTTGTAACGAGGCCAGAGAAGCTTGACGTCATT    705

BSNT_00701___    706 GTGGCGAGCAACTTGTTCGGTGATATTTTAACCGACATCAGCTCAAGCC-    754
                     ||.||.|||||.||.|||||.||||||||.|||||.|||.|..|  |.| 
BL03389___ycs    706 GTTGCCAGCAATTTATTCGGCGATATTTTGACCGATATCGGGGC--GGCG    753

BSNT_00701___    755 -TGATGGGAAGCATCGGCATTGCGCCTTCTGCGAACATCAATCCATCCGG    803
                      |.|||||||||||.||..|.|||||..|.||.|||||.|||..|..|||
BL03389___ycs    754 ATTATGGGAAGCATAGGTGTGGCGCCGGCCGCCAACATTAATGTAAACGG    803

BSNT_00701___    804 CAAATATCCGTCCATGTTTGAACCGGTTCACGGCTCAGCTCCTGACATTG    853
                     |||||||||.||.||||||||.||.||.||||||||.|||||.|||||..
BL03389___ycs    804 CAAATATCCATCTATGTTTGAGCCTGTGCACGGCTCTGCTCCGGACATCA    853

BSNT_00701___    854 CCGGACAGGGCCTTGCCAATCCGATTGGCCAGATTTGGACAGCGAAGCTG    903
                     .||||.|.||..|.|||||||||||.|||||.||||||||.||.||..||
BL03389___ycs    854 TCGGAAAAGGAATCGCCAATCCGATCGGCCAAATTTGGACGGCAAAAATG    903

BSNT_00701___    904 ATGCTCGACCACTTCGGAGAGGAAGAGCTGGGGGCGAAAATT-CTGGATG    952
                     ||||||||.||.|||||.||.|||||.||.||.|| ||.||| ||.||.|
BL03389___ycs    904 ATGCTCGATCATTTCGGGGAAGAAGAACTCGGTGC-AAGATTGCTTGACG    952

BSNT_00701___    953 TAATGGAGCAAGTGACTGCCGA-CGGCATCAAAACACGCGACATTGGGGG   1001
                     |.||.||..|.|| .||...|| ||||..|..|||.|..||.||.||.||
BL03389___ycs    953 TGATTGAAGACGT-TCTAAAGAGCGGCTACTTAACGCCTGATATCGGCGG   1001

BSNT_00701___   1002 ACAAAGCACAACGGCTGAGGTCACTGATGAAATCTGTTC--GCGCTTAAG   1049
                     ...|||.||.||||.|||.||.||.||.||||||  .||  ||||.|.||
BL03389___ycs   1002 TTCAAGTACGACGGATGATGTGACAGAAGAAATC--ATCAAGCGCGTGAG   1049

BSNT_00701___   1050 AAAGCTCTGA--------   1059
                             ||        
BL03389___ycs   1050 --------GACCATATAA   1059


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