Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00701 and BL03389
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:20
# Commandline: needle
# -asequence dna-align/BSNT_00701___ycsA.1.5803.seq
# -bsequence dna-align/BL03389___ycsA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00701___ycsA-BL03389___ycsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00701___ycsA-BL03389___ycsA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00701___ycsA
# 2: BL03389___ycsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1118
# Identity: 758/1118 (67.8%)
# Similarity: 758/1118 (67.8%)
# Gaps: 118/1118 (10.6%)
# Score: 2396.5
#
#
#=======================================
BSNT_00701___ 1 ATGAAACAATTCGAGATTGCGGCA--ATACCGGGATACGGTGTAGGAAAA 48
||||||..||||.|.||||| || |||||.||..||||.|||||.|||
BL03389___ycs 1 ATGAAAGTATTCAACATTGC--CAGCATACCCGGTGACGGGGTAGGGAAA 48
BSNT_00701___ 49 GAGGTTGTAGCGGCTGCTGAGAAAGTGCTTCAT-ACAGCCG---CTGAGG 94
||.||.|||.|.||||| |.||.|.|.|| | |.|||.| |.||.|
BL03389___ycs 49 GAAGTCGTACCTGCTGC--ACAACGAGTTT--TGAAAGCGGTTTCGGATG 94
BSNT_00701___ 95 TACACGGAGGTTTGTCATTCTC-ATTCACGGCTTTTCCATGGAGCTGTGA 143
|.|||||.||..|.||||| || .||.||||..|||||||..||||||||
BL03389___ycs 95 TTCACGGGGGACTCTCATT-TCGGTTTACGGAGTTTCCATACAGCTGTGA 143
BSNT_00701___ 144 TTATTACTTGGAGCACGGCAAAATGATGCCCGAAGA-----TGGAATACA 188
.|||||.|||||.|||||..||||||||||.||.|| ||||..|
BL03389___ycs 144 GTATTATTTGGAACACGGGGAAATGATGCCTGATGACGGCTTGGAGCA-- 191
BSNT_00701___ 189 TACGCTTACTCAATTTGA-AGCGGTTTTTTTGGGAGCCGTCGGAAATCCG 237
|||.|...|.||.|| |||...|||.||||| ||.||.||||| |.|
BL03389___ycs 192 ---GCTGAAAGAGTTCGACAGCATCTTTCTTGGG-GCTGTAGGAAA-CAG 236
BSNT_00701___ 238 -AAGCTGGTTCCCGATCATATATCGTTATGGGGACTGCTGCTGAAAATCC 286
|||||.||.|||||.|||||.||..|.|||||.|||||..|.|||||||
BL03389___ycs 237 CAAGCTTGTCCCCGACCATATTTCCCTGTGGGGGCTGCTCATTAAAATCC 286
BSNT_00701___ 287 GGAGGGAGCTTGAGCTTTCCATTAATATGAGACCCGCCAAACAAATGGCA 336
|..|.||..||||.|....|||.||.||.|||||.||.|||.|..||..|
BL03389___ycs 287 GCCGCGAATTTGAACAGGTCATCAACATTAGACCTGCGAAATATTTGCAA 336
BSNT_00701___ 337 GGCATTACGTCGCCGCTTCTGC--ATCCAAATGATTTTGA----CTTCGT 380
||.||.|.|||.||||| .|| |.|||||.|||||.|| ||| ||
BL03389___ycs 337 GGAATCAAGTCTCCGCT--GGCCAACCCAAAAGATTTCGATCTGCTT-GT 383
BSNT_00701___ 381 GGTGATTCGCGAGAACAGTGAAGGTGAATACAG--TGAAGTCGGCGGGCG 428
.||.| |.||.|||||||||||.|||||||| .|| ||||.||..|
BL03389___ycs 384 CGTCA---GGGAAAACAGTGAAGGGGAATACAGCTCGA--TCGGAGGCAG 428
BSNT_00701___ 429 CATTCACAGAGGCGATGATGAAATCGCCATCCAGAATGCCGTGTTTACGA 478
.||...|||.|..||.||||||||||||||.||.||||||||.|||.|.|
BL03389___ycs 429 AATCTTCAGGGATGAAGATGAAATCGCCATTCAAAATGCCGTTTTTTCAA 478
BSNT_00701___ 479 GAAAAGCGACAGAACGTGTCATGCGCTTTGCCTTCGAATTGGCG---AA- 524
||||||.|.|.||..|.|..|||||||||||.||.||.|||||| ||
BL03389___ycs 479 GAAAAGGGGCGGAGAGGGCGATGCGCTTTGCTTTTGAGTTGGCGGCTAAG 528
BSNT_00701___ 525 ---AAAACGGCGCAGCCATGTGACAAGCGCCACAAAGTCTAACGG---CA 568
||||.| |||||.||||||||.||||||||.||||| |.
BL03389___ycs 529 CGGAAAAAG-------CATGTCACAAGCGCAACAAAGTCGAACGGAATCG 571
BSNT_00701___ 569 TTTA-TCATGCGATGCCGTTTTGGGATGAAGTCTTTCAGCAGACAG---- 613
|||| ||| |||||.||||||||||||||||||.||.|.||.|
BL03389___ycs 572 TTTATTCA----ATGCCTTTTTGGGATGAAGTCTTTGAGAACACGGCAAA 617
BSNT_00701___ 614 --------CCGCTGATTATAGCGGAATCGAAACATCATCTCAGCATATTG 655
|||.| ||||..||.||.||| |||||.||||
BL03389___ycs 618 AGACTACCCCGAT-ATTACCGCAGATTCG-----------CAGCACATTG 655
BSNT_00701___ 656 ATGCGCTGGCCGCTTTTTTTGTGACGCGTCCGGAAACGTTTGATGTCATT 705
|.||||||.|.||.||||||||.|||.|.||.||.|.|.||||.||||||
BL03389___ycs 656 ACGCGCTGTCGGCCTTTTTTGTAACGAGGCCAGAGAAGCTTGACGTCATT 705
BSNT_00701___ 706 GTGGCGAGCAACTTGTTCGGTGATATTTTAACCGACATCAGCTCAAGCC- 754
||.||.|||||.||.|||||.||||||||.|||||.|||.|..| |.|
BL03389___ycs 706 GTTGCCAGCAATTTATTCGGCGATATTTTGACCGATATCGGGGC--GGCG 753
BSNT_00701___ 755 -TGATGGGAAGCATCGGCATTGCGCCTTCTGCGAACATCAATCCATCCGG 803
|.|||||||||||.||..|.|||||..|.||.|||||.|||..|..|||
BL03389___ycs 754 ATTATGGGAAGCATAGGTGTGGCGCCGGCCGCCAACATTAATGTAAACGG 803
BSNT_00701___ 804 CAAATATCCGTCCATGTTTGAACCGGTTCACGGCTCAGCTCCTGACATTG 853
|||||||||.||.||||||||.||.||.||||||||.|||||.|||||..
BL03389___ycs 804 CAAATATCCATCTATGTTTGAGCCTGTGCACGGCTCTGCTCCGGACATCA 853
BSNT_00701___ 854 CCGGACAGGGCCTTGCCAATCCGATTGGCCAGATTTGGACAGCGAAGCTG 903
.||||.|.||..|.|||||||||||.|||||.||||||||.||.||..||
BL03389___ycs 854 TCGGAAAAGGAATCGCCAATCCGATCGGCCAAATTTGGACGGCAAAAATG 903
BSNT_00701___ 904 ATGCTCGACCACTTCGGAGAGGAAGAGCTGGGGGCGAAAATT-CTGGATG 952
||||||||.||.|||||.||.|||||.||.||.|| ||.||| ||.||.|
BL03389___ycs 904 ATGCTCGATCATTTCGGGGAAGAAGAACTCGGTGC-AAGATTGCTTGACG 952
BSNT_00701___ 953 TAATGGAGCAAGTGACTGCCGA-CGGCATCAAAACACGCGACATTGGGGG 1001
|.||.||..|.|| .||...|| ||||..|..|||.|..||.||.||.||
BL03389___ycs 953 TGATTGAAGACGT-TCTAAAGAGCGGCTACTTAACGCCTGATATCGGCGG 1001
BSNT_00701___ 1002 ACAAAGCACAACGGCTGAGGTCACTGATGAAATCTGTTC--GCGCTTAAG 1049
...|||.||.||||.|||.||.||.||.|||||| .|| ||||.|.||
BL03389___ycs 1002 TTCAAGTACGACGGATGATGTGACAGAAGAAATC--ATCAAGCGCGTGAG 1049
BSNT_00701___ 1050 AAAGCTCTGA-------- 1059
||
BL03389___ycs 1050 --------GACCATATAA 1059
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