Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05368 and BL03384

See Amino acid alignment / Visit BSNT_05368 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:29
# Commandline: needle
#    -asequence dna-align/BSNT_05368___yvjA.1.5803.seq
#    -bsequence dna-align/BL03384___yvjA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05368___yvjA-BL03384___yvjA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05368___yvjA-BL03384___yvjA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05368___yvjA
# 2: BL03384___yvjA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 898
# Identity:     628/898 (69.9%)
# Similarity:   628/898 (69.9%)
# Gaps:          92/898 (10.2%)
# Score: 2144.5
# 
#
#=======================================

BSNT_05368___      1 ATG---ATGGACGTACGGAATAAAAC---------ATTGT----GGATTT     34
                     |||   ||||||         |||||         |||||    || |..
BL03384___yvj      1 ATGAATATGGAC---------AAAACGAGATATCAATTGTTTACGG-TGC     40

BSNT_05368___     35 TGCGGGATTATGTATACATATTAGTAGGAGCAGCGATTACG--GCCGTGT     82
                     ||||.||.||.|..||.||..|..|.|||.||||..|  ||  ||.|||.
BL03384___yvj     41 TGCGTGACTACGGCTATATCCTGTTTGGATCAGCCGT--CGTCGCTGTGA     88

BSNT_05368___     83 CCTTTAATGTATTTTTGCTTCCGAACAAGATTGCCGCCGGCGGTGTCAGC    132
                     |.||||||.|.|||||||||||.|||..||||||.||||||||.||||||
BL03384___yvj     89 CATTTAATATGTTTTTGCTTCCCAACCGGATTGCAGCCGGCGGAGTCAGC    138

BSNT_05368___    133 GGGATCAGTACGATTTTACAATCATATGGTTTTGAAGCAGCGTATGTACA    182
                     ||.|||||.||.|||||.|||||.|..||.||||||||.||.|||||.||
BL03384___yvj    139 GGCATCAGCACCATTTTGCAATCGTTCGGCTTTGAAGCCGCCTATGTGCA    188

BSNT_05368___    183 GTGG--ATTATTAATATCCCTTTATTTATTGCTGGCGTCATTTTGCTCGG    230
                     .|||  ||  |||||||.||||||||||||||.||.||..|..|.|||||
BL03384___yvj    189 ATGGGCAT--TTAATATTCCTTTATTTATTGCCGGGGTTCTGGTACTCGG    236

BSNT_05368___    231 CGGGAAATTTGGGCTAAAGACGCTTGCTGGTTCTGTGTTTTTGCCGCTAG    280
                     .||.|||||.||..|.||||||||||..||.|||||.|||.|.|||.|.|
BL03384___yvj    237 AGGAAAATTCGGCATCAAGACGCTTGTCGGGTCTGTTTTTCTCCCGTTTG    286

BSNT_05368___    281 TTGTGTTTTTGACAAGGGATATTCAGCCCGCCACTCATCATGAA----CT    326
                     |.||.|...||||..||||.|||...||.||.||..|    |||    ||
BL03384___yvj    287 TCGTATACGTGACGCGGGACATTGCTCCGGCGACAGA----GAATCCGCT    332

BSNT_05368___    327 CTTGGCGGCGATTTTTGGCGGTGTCGGGATAGGTATCGGAATTGGTATTG    376
                     ||||||.||.|||||.|||||||||||.||.||..||||.||.||.||.|
BL03384___yvj    333 CTTGGCCGCCATTTTCGGCGGTGTCGGCATCGGAGTCGGGATCGGGATGG    382

BSNT_05368___    377 TGTACTT-------AGGGAAAGGTTCGACGGGAGGAACAGCCTTGGCTGC    419
                     |   |||       |||    ||.|||||.||.||.||.||..||||.||
BL03384___yvj    383 T---CTTTCTCGGAAGG----GGCTCGACAGGCGGCACTGCGCTGGCCGC    425

BSNT_05368___    420 ACAGATCATTCATAAGTACTCCGGTCTGTCATTGGGGAAGTGTCTCGCCA    469
                     .||.|||||||||||||||.||||.|||||....||.||.|||.|.||..
BL03384___yvj    426 GCAAATCATTCATAAGTACACCGGGCTGTCGCAAGGCAAATGTTTGGCGC    475

BSNT_05368___    470 TCATTGACGGAATGATCGT--TGTTACGGCTATGATTGTATTTAATATTG    517
                     |.||||||||||.||||||  |||  |.||.|||.||||.|||||.||.|
BL03384___yvj    476 TGATTGACGGAACGATCGTCCTGT--CCGCGATGTTTGTTTTTAACATCG    523

BSNT_05368___    518 AGCAAGG-CTTATATGCCATGCTTGGCGTCTATGTGTCCAGCAAAACCAT    566
                     |.||.|| ||| |||||.|||||||||||.|||.|.||.|||||||||||
BL03384___yvj    524 AACAGGGACTT-TATGCTATGCTTGGCGTTTATATATCAAGCAAAACCAT    572

BSNT_05368___    567 TGATGTTGTGCAAGTCGGCTTTAATCGTTCAAAAATGGCGCTCATCATTA    616
                     .|||||..|.||.|||||.||.||.|||||.|||||||||.|.|||||||
BL03384___yvj    573 CGATGTCATCCAGGTCGGATTGAACCGTTCCAAAATGGCGATGATCATTA    622

BSNT_05368___    617 CAAAGCAGGAGCAGGCTGTCAAG-----GAGGCTGT-CTTACAGAAGATT    660
                     |.||.|.|||..|||     |||     .|.||.|| ||.| |.||.||.
BL03384___yvj    623 CGAACCGGGAAGAGG-----AAGTTCGACATGCGGTACTGA-ATAAAATC    666

BSNT_05368___    661 GACAGAGGCGTGACAAAAATCTCTGCAGTCGGCGGATATACTGATGATGA    710
                     |||||.||..|.||.|||||.||.||.|||||.||.|||||.||||||||
BL03384___yvj    667 GACAGGGGGATTACGAAAATATCAGCGGTCGGAGGCTATACAGATGATGA    716

BSNT_05368___    711 CCGTCCGATTTTAATGTGCGTGGTTGGGCAAACTGAATTCACCAAATTGA    760
                     .||.||.|||||.|||||||||||.||.||.||.||.|||||.||..|||
BL03384___yvj    717 GCGGCCTATTTTGATGTGCGTGGTCGGCCAGACCGAGTTCACAAAGCTGA    766

BSNT_05368___    761 AACAAATCGTCAAACAGATTGATGAGTCAGCTTTTGTGATTGTAGCAGAC    810
                     |||||.||||.|||||.|||||||||||.||.|||||.|||         
BL03384___yvj    767 AACAACTCGTAAAACACATTGATGAGTCTGCATTTGTCATT---------    807

BSNT_05368___    811 GCGA-----GC----GAGGTGCTGGGCGAGGGTTTCAAACGCGCTTAA    849
                     ||||     ||    ||||||||.|||||||||||.||||||||.|||
BL03384___yvj    808 GCGATGGATGCTTCAGAGGTGCTTGGCGAGGGTTTTAAACGCGCATAA    855


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05368 and BL03384

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
