Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05378 and BL03375
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:30
# Commandline: needle
# -asequence dna-align/BSNT_05378.1.5803.seq
# -bsequence dna-align/BL03375___yvyC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05378-BL03375___yvyC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05378-BL03375___yvyC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05378
# 2: BL03375___yvyC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 345
# Identity: 142/345 (41.2%)
# Similarity: 142/345 (41.2%)
# Gaps: 156/345 (45.2%)
# Score: 488.5
#
#
#=======================================
BSNT_05378 0 -------------------------------------------------- 0
BL03375___yvy 1 TTGTCGATCAATAGATTGTCATCTTTAGAACCCATTATTGATGCTTACAA 50
BSNT_05378 0 -------------------------------------------------- 0
BL03375___yvy 51 AACACAGATGTTGAATAAACAGTATGAAGCTGTGGAACGCCCGCAGCAGA 100
BSNT_05378 1 ----------------------------------------------ATG- 3
|.|
BL03375___yvy 101 CGGACGCTGCAGAATTTACATTTGCTCAGCTTGAAAAAACCATACAAGGC 150
BSNT_05378 4 ---AACAAGCTTTTGGAACCTTCGCAAGTTCATCTGAAGTTCGAGCTTCA 50
|||||.||||||||.||.|||||.||.||.||..||||.|.||||||
BL03375___yvy 151 GCAAACAACCTTTTGGAGCCGTCGCAGGTGCACCTACAGTTTGTGCTTCA 200
BSNT_05378 51 TGACAAGTTAAATGAATACTATGTAAAGGTAATAGAGGACTCT---ACAA 97
.||.||.||....||.||.|||||.|||| |.|.||||..| |||.
BL03375___yvy 201 CGAAAAATTGGGAGAGTATTATGTGAAGG---TCGTGGACAATCGGACAG 247
BSNT_05378 98 ATGAAGTGATCCGCGAAATTCCACCAAAACGGTGGCTTGATTTTTATGCG 147
|.|||||..|||||||.|||||.|||||...||||||.||||||||||||
BL03375___yvy 248 AGGAAGTCGTCCGCGAGATTCCGCCAAAGGAGTGGCTCGATTTTTATGCG 297
BSNT_05378 148 GCTATGACTGAATTTCTTGGGTTATTTGTAGATGAAAAAAAGTAG 192
||.|||.|.||||||.|.||||||.||||.|||.|||..|..|||
BL03375___yvy 298 GCGATGGCGGAATTTATGGGGTTAATTGTCGATAAAACTACATAG 342
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