Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05389 and BL03365
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:31
# Commandline: needle
# -asequence dna-align/BSNT_05389___comFC.1.5803.seq
# -bsequence dna-align/BL03365___comFC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05389___comFC-BL03365___comFC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05389___comFC-BL03365___comFC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05389___comFC
# 2: BL03365___comFC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 874
# Identity: 455/874 (52.1%)
# Similarity: 455/874 (52.1%)
# Gaps: 290/874 (33.2%)
# Score: 1129.5
#
#
#=======================================
BSNT_05389___ 1 -------------------ATGTCAAACGAAGCAGGAGGAGGCATTCATA 31
|.| |||.||||| || |||||.| |||
BL03365___com 1 ATGAAAACCCGCTTTGCGCAAG-CAATCGAAG-AG--GGAGGGA---ATA 43
BSNT_05389___ 32 AACTGATCTGTTTATTATGTGATTCGC--------AATTTTCTCAAGATG 73
||||||..||||||.|.||||...||| .|||.||||
BL03365___com 44 AACTGAATTGTTTAATTTGTGCAGCGCCTCTTTTACATTCTCTC------ 87
BSNT_05389___ 74 TTACATGGAGAGCCCTT--------TTTTTACTA----AAGCCTGATGAA 111
.||||| |.|| |||||||.| ||| .|||
BL03365___com 88 --TCATGG-----CATTCTTTTTTCTTTTTACGATCAGAAG-----AGAA 125
BSNT_05389___ 112 AAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGA-----------AAATC 150
|| || ||||| |.||..|||||| |.|||
BL03365___com 126 AA-------TA----TGCAG--GGAATGTAAAGAGAACTTTATCGAGATC 162
BSNT_05389___ 151 ACAGGA--CATATCTGCCCCCTGTGCGGCAGACCTCA-----------AT 187
|.|||| |.|| |||||...||||||..|.||.|| |.
BL03365___com 163 AAAGGAACCGTA--TGCCCTAAGTGCGGACGGCCACAGGGGAGCGAAGAG 210
BSNT_05389___ 188 CTGTTCATGCCGTATGCAGGGATTGCG--AGGTGTGGAGAACAAGGATCA 235
||| |||.|.||.|||| |..|| ||||..|| |||.
BL03365___com 211 CTG-----------TGCGGTGACTGCGCAAAATG-GGAGGCCA---ATCC 245
BSNT_05389___ 236 G--AGACAGTTTGCTATTGCGTCAAAACCGTTCAGTTTA-CACATATAAT 282
| |..|.|.|..||.|||.|.||||||||.||.||||| |.| ||.|||
BL03365___com 246 GTTAACCCGCTCTCTTTTGAGGCAAAACCGCTCTGTTTATCTC-TACAAT 294
BSNT_05389___ 283 GATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAGAGGAGATGCAGA 332
..|.|.|||||||||...||..||||||||||.||.|||||.|||||.||
BL03365___com 295 ACTTTCATGAAAGAAGTCCTTGCCCGTTTTAAGTTCAGAGGTGATGCTGA 344
BSNT_05389___ 333 AAT-----------------CATAAATGCATTTAAAAGTGATTTTTCTTC 365
|.| | |.||||||..||.|.|| |||
BL03365___com 345 ACTGGTCTTCGCTTTTGCCCC-----TTCATTTATCAGCGCTT----TTC 385
BSNT_05389___ 366 AACCTTTTCTAAGGTTTAC-----------CCCGATAAGCATTTTGTTCT 404
||| || ||| |||| |.||||.|
BL03365___com 386 AAC-------AA----TACTTCCGCCGCAGCCCG--------TCTGTTTT 416
BSNT_05389___ 405 TGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACC 454
.||.||.||.||.||.||..|.|||||..|||..|||.|.||||||||.|
BL03365___com 417 AGTTCCGATACCTCTCAGTGAAGAACGTAAAGCGGAGAGGGGATTTAATC 466
BSNT_05389___ 455 AGGCACAGC-TCTTGGCAGAATGTTTAGACCGGCCTTCC------CA--- 494
||||..||| ||||| ||||| ||
BL03365___com 467 AGGCGGAGCGTCTTG-------------------CTTCCTTATTACAAAT 497
BSNT_05389___ 495 ---------CCATCCCCTCATTCGCCTGAAT----AATGAGAAACAGTCA 531
.||||||.|.|| |.|||| |||||.|||||.||.
BL03365___com 498 ACCCGTTATTCATCCCTTGAT----CAGAATCGAAAATGAAAAACAATCC 543
BSNT_05389___ 532 AAGAAAAAGAAAACA-GAACGCCTGCTGTCAGAGCGCAT----------- 569
|| |||||| || ||| ||||||.||
BL03365___com 544 AA-AAAAAG----CAGGAA-----------AGAGCGAATTAAGCCAAAAA 577
BSNT_05389___ 570 ---TTTTGATACAA---AAAATAATTCAG--CAGAAGGTATGAATATCAT 611
|||| ||.|| ||||....|||| .|||| |.||.||.||||
BL03365___com 578 CCGTTTT--TAGAACCGAAAAGGGGTCAGTAAAGAA--TCTGGATGTCAT 623
BSNT_05389___ 612 TTTAATAGACGATCTT-TATACAACAGGCGCCACCTTGCACTTC-GCAGC 659
.||.||.||||| ||| |||||.|||||.||.||| |||| .||..
BL03365___com 624 ATTGATTGACGA-CTTGTATACGACAGGAGCGACC-----CTTCATCATG 667
BSNT_05389___ 660 CCGCTGCTT----------ATTAGAAAAAGGAAAAGCCGCTTCAGTGTCA 699
||||||.|| ||..|.|.|||.|||| ||.||.|||
BL03365___com 668 CCGCTGATTGCCTGATGACATCCGGAGAAGCAAAA------TCTGTATCA 711
BSNT_05389___ 700 TCTTTTACCTTGATCAGAAGCTAA 723
||.|.|||.||.||.|||||||||
BL03365___com 712 TCATATACATTAATTAGAAGCTAA 735
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