Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05393 and BL03362
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:32
# Commandline: needle
# -asequence dna-align/BSNT_05393___yviA.1.5803.seq
# -bsequence dna-align/BL03362___degV.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05393___yviA-BL03362___degV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05393___yviA-BL03362___degV.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05393___yviA
# 2: BL03362___degV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 901
# Identity: 614/901 (68.1%)
# Similarity: 614/901 (68.1%)
# Gaps: 113/901 (12.5%)
# Score: 1994.5
#
#
#=======================================
BSNT_05393___ 1 ATGAATATTGCAGTCGTAACAGACAGCACGGCATATATTCCGAAAGAAAT 50
|||||.|..|||||.|||||||||||.|||||||||||.||.|||||..|
BL03362___deg 1 ATGAAAACAGCAGTAGTAACAGACAGTACGGCATATATACCTAAAGACCT 50
BSNT_05393___ 51 ACGTGA--ACAACATCAGATACATATGATCCCTCTCCAGGTTGTTTTTAG 98
.||||| .|.||| |.||.||||||||.||||||.|.||..|.|||
BL03362___deg 51 GCGTGACCGCTACA--ATATTCATATGATACCTCTCAATGTGATCTTT-- 96
BSNT_05393___ 99 GGAGGAGACT---TACCGTGAAGAAATTGAGTTGGACTGGAAAAGCTTTT 145
||| |||||| |||.|.|||||.||.||..||..||||||...||.||
BL03362___deg 97 GGA-GAGACTTCATACAGGGAAGAGATCGATATGAGCTGGAAGGACTATT 145
BSNT_05393___ 146 ACGAAGAAGTGAAAAAAC-----ATAATGAGCTCCCGACGACTTCTCAG- 189
||.||||||| ||||.| |.||| ||||||||||||||.|||
BL03362___deg 146 ACAAAGAAGT--AAAAGCCCACGAAAAT---CTCCCGACGACTTCCCAGC 190
BSNT_05393___ 190 CCGCCAATCGGCGAGCTGGTTGCGTTGTATGAAGAGCTTGGCAAGTCTTA 239
|||||.| |||||||.||.||.|..|.||||||.|.||.||..|..|.||
BL03362___deg 191 CCGCCTA-CGGCGAGTTGATTTCTCTCTATGAAAAACTCGGTGAAACATA 239
BSNT_05393___ 240 TGATGCGGTTATCAGTATCCATCTTTCCAGCGGGATCAGCGGAACATTCA 289
|||.|||||.|||||.|||||.|||||||||||.||||||||||||||||
BL03362___deg 240 TGACGCGGTCATCAGCATCCACCTTTCCAGCGGCATCAGCGGAACATTCA 289
BSNT_05393___ 290 GCAGTG------CAGC-AGCGG-CTGATTCGATGGTCGACAATATTGATG 331
.|||.| |||| ||||| .||.|| ||.|| .|||.|.|
BL03362___deg 290 ACAGCGCTGTATCAGCAAGCGGTATGCTT-GAAGG-------AATTAAAG 331
BSNT_05393___ 332 TGTATCCATTTGACTCAGAGATCAGCTGCTTGGCTCAAGGCTTTTATGCC 381
|||||||.|||||.||.||.|||||||||.|||||||.||.||||||||.
BL03362___deg 332 TGTATCCGTTTGATTCGGAAATCAGCTGCATGGCTCAGGGTTTTTATGCG 381
BSNT_05393___ 382 CTTAAAGCTGCTGA-ATTAATCAAAAACGGAGC-------------ATCA 417
.|..|.||.||||| ||.....||||| ||||| ||||
BL03362___deg 382 ATCGAGGCGGCTGAGATGGCGGAAAAA-GGAGCGGCTCCTGAGGAAATCA 430
BSNT_05393___ 418 T-CGCCGGAAGATATTATAAAAGAAC-TGGAAGAAATGAAAAAAACAGTT 465
| |||| || ||||..|.|||||| |..|
BL03362___deg 431 TCCGCC------------------ACTTGGATCATATGAAA-----ACCT 457
BSNT_05393___ 466 CGA-----GCTTATTTTATGGTAGATGACTTAGCTCATCTTCAGCGCGGC 510
||| ||||||||||||||.||.|||.|..|.|||.|.||..|.||.
BL03362___deg 458 CGATGAGGGCTTATTTTATGGTTGACGACCTTTCACATTTGCAAAGGGGA 507
BSNT_05393___ 511 GGGCGATTAAGCAGCGCCCAAGCCTTCATTGGTAGTCTTCTAAAGGTAAA 560
||.||..|.|||.|||||||.||.||..|.||.||.|||.||||.|||||
BL03362___deg 508 GGACGTCTGAGCGGCGCCCAGGCTTTTGTCGGAAGCCTTTTAAAAGTAAA 557
BSNT_05393___ 561 GCCTATCCTTCATTTTGACAATAAGGTAATTGTGCCTTTTGAGAAGATTC 610
|||.|||.|.||||||||.||.|||.|.||.||.||.|..|||||.||.|
BL03362___deg 558 GCCGATCTTGCATTTTGAGAACAAGCTGATCGTTCCCTACGAGAAAATCC 607
BSNT_05393___ 611 GCACACGTAAAAAAGCAATTTCGCGAA---TTTA--TGAGCTTTTAGACG 655
|.||..|.||||||||.|| ||| |||| |||||||||.|.||
BL03362___deg 608 GGACGAGAAAAAAAGCGAT-----GAACCGTTTATTTGAGCTTTTTGGCG 652
BSNT_05393___ 656 AAGATG-CGAGTAAAGGGTTGCCTATGCGAGCTGCTGTTATCCACGCTAA 704
|||||| |||| |||||...|||..||.||||.|.|||.||.||.||.||
BL03362___deg 653 AAGATGCCGAG-AAAGGAAAGCCGCTGAGAGCGGTTGTGATTCATGCCAA 701
BSNT_05393___ 705 TCGAGAGGAAGAAGCAGCGA--AAATCATTGAAGAGCTTTCTGCAA--AA 750
.||.||.|||||||| ||| ||||.||.||||| .||.|..|| ||
BL03362___deg 702 CCGTGAAGAAGAAGC--CGATCAAATAATCGAAGA--ATTGTCGAAGCAA 747
BSNT_05393___ 751 TATCCTCATGTTGAATTTTATAACAGCTATTTTGGCGCGGTAATCGGCAC 800
|||.|.|||||.|||||||||||.||||||||.||..|.||.||||||||
BL03362___deg 748 TATGCACATGTCGAATTTTATAAAAGCTATTTCGGGCCTGTGATCGGCAC 797
BSNT_05393___ 801 TCATTTGGGTGAAGGTGCGTTAGGAATTTGCTGGT-----GTTTTAAATA 845
|||..|.||||||||.|||.|.||.||...||||| || |||
BL03362___deg 798 TCACCTTGGTGAAGGAGCGATGGGTATCGCCTGGTATACAGT-----ATA 842
BSNT_05393___ 846 A 846
|
BL03362___deg 843 A 843
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