Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01933 and BL03343
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:28
# Commandline: needle
# -asequence dna-align/BSNT_01933___yjbH.1.5803.seq
# -bsequence dna-align/BL03343___yjbH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01933___yjbH-BL03343___yjbH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01933___yjbH-BL03343___yjbH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01933___yjbH
# 2: BL03343___yjbH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 943
# Identity: 665/943 (70.5%)
# Similarity: 665/943 (70.5%)
# Gaps: 83/943 ( 8.8%)
# Score: 2256.5
#
#
#=======================================
BSNT_01933___ 1 TTGACAAACTATCAGCATGAGCTATACTTCGCCCATTGCCACGGTCATCC 50
||||||..|.||||||.|||.|.||..|||.|||||||||||||.|||||
BL03343___yjb 1 TTGACACTCAATCAGCGTGACCAATTTTTCTCCCATTGCCACGGACATCC 50
BSNT_01933___ 51 AAAAAAACCGCTTGAAATTTATATGTTTGTAGACCCTTTATGTCCTGAAT 100
..||||||||.|.|||||||||||||||||.||||||||||.|||.||||
BL03343___yjb 51 GCAAAAACCGATGGAAATTTATATGTTTGTCGACCCTTTATCTCCCGAAT 100
BSNT_01933___ 101 GCTGGTCCTTAGAGCCCGTCATCAAAAAGCTGAAAATCAGATACGGACGT 150
|||||.|.||.|||||.|..|||||||||.||||||||.|.|||||.||.
BL03343___yjb 101 GCTGGGCATTGGAGCCGGCGATCAAAAAGTTGAAAATCCGCTACGGCCGC 150
BSNT_01933___ 151 TTTTTCACCTTACGCATTATCGCTTCCGCA---AGCCTTACCGCTTTAAA 197
||||||||..||.|.||.|||| ||||| |||.||||.||..|.||
BL03343___yjb 151 TTTTTCACACTAAGGATCATCG---CCGCATGCAGCATTACAGCGCTGAA 197
BSNT_01933___ 198 ---TAAAAAGCGAAAAAAGCATCTTCTCGCAGAAGCATGGGAAAAGATCG 244
|.|.||.||.|||||||..|..||||||||.||||||||||||||||
BL03343___yjb 198 CGTTCAGAAACGCAAAAAGCGCCGGCTCGCAGAGGCATGGGAAAAGATCG 247
BSNT_01933___ 245 CGAGCCGCTCTGGCATGTCATGTGACGGCAATG--TCTGGTTCGAACAGG 292
|..||.|.||.||||||||.||.||||| ||.| .||| ||.|
BL03343___yjb 248 CATGCAGGTCGGGCATGTCTTGCGACGG-AACGCTCCTG-------CACG 289
BSNT_01933___ 293 ATCAGCCGCTTTCATCGCCTTATATGGCTGCTCTCGCTTTTAAAGCAGCC 342
|..|..|.||.||..|.|||||..|.||..|.||||||||.||||||||.
BL03343___yjb 290 ACAAAGCACTCTCTGCACCTTACCTTGCCTCGCTCGCTTTGAAAGCAGCG 339
BSNT_01933___ 343 GAATTGCAAGGACGAAAAGCCGGCATGCAATTTCTCAGAAATATGCAGGA 392
|||.|||||||..|||||||.||..||||.|||.|.|||...||||||||
BL03343___yjb 340 GAACTGCAAGGCAGAAAAGCAGGGCTGCAGTTTTTGAGATGCATGCAGGA 389
BSNT_01933___ 393 GAGCCTATTTGTT--TCAA--AGAAAAATATTACGGATGAAAACGTGCTT 438
.||| ||||| |||| ||.|..||||.||.||.|||.|.||||||
BL03343___yjb 390 AAGC----TTGTTTCTCAATCAGCAGGATATCACTGAAGAACAGGTGCTT 435
BSNT_01933___ 439 TTGGAGATTGCTGAAAATAC-AAGTCTCGATCTTGAAGAATTCAAAAAAG 487
||.|.||||||.||..|.|| .|| ||||||.|.||.||||||||||..|
BL03343___yjb 436 TTAGCGATTGCAGAGCACACGCAG-CTCGATTTGGAGGAATTCAAAAGGG 484
BSNT_01933___ 488 ATCTGCATTCTCAAAGCGCGGTCAAGGCGCTTCAATGTGACATGAAAATT 537
||||.|||||.||.|||||.||.||.||.||.|||||.||..|.|||||.
BL03343___yjb 485 ATCTTCATTCGCAGAGCGCCGTGAAAGCCCTGCAATGCGATTTAAAAATC 534
BSNT_01933___ 538 GCTGCTGAGATGGATGT---TTCTGTTAATCCGACACTGACGTTTTTTAA 584
|||||.||.|||||.|| .||||| ||||||.||.||||||||.||
BL03343___yjb 535 GCTGCCGAAATGGAAGTGGCATCTGT---TCCGACTCTTACGTTTTTCAA 581
BSNT_01933___ 585 TACGCAGCAT-----GAGGATGAAGGGCTTAAAGTT--CCTGGCAGCTAC 627
||||.| .|||| ||| |||||||||.| || ||.|..||.
BL03343___yjb 582 ----CAGCCTCCGCGAAGGA-GAA-GGCTTAAAGGTAACC-GGAAATTAT 624
BSNT_01933___ 628 TCATATGATGTATATGAAGAAATTTTATTTGAGATGCTTGGCGACGAGCC 677
||||||||..|.||.||||||.|.||.|||||.|||||||||||.|||||
BL03343___yjb 625 TCATATGAAATTTACGAAGAAGTATTGTTTGAAATGCTTGGCGATGAGCC 674
BSNT_01933___ 678 GAAGCCGTCGGAAACACCGCCTTTAGAATGTTTTATTGAATATTTCCGCT 727
||||||.||..|||||||.||..|.|||..||||||.|||||.||.|..|
BL03343___yjb 675 GAAGCCTTCACAAACACCTCCGCTCGAACTTTTTATCGAATACTTTCAAT 724
BSNT_01933___ 728 TCGTTGCCTCTAAAGAAATTGCGCTTGTATATGATCT-GAGCCTTGAAGA 776
|.||.|||...|||||.|||||..|.||.||.|| || ||..||||||.|
BL03343___yjb 725 TTGTAGCCGACAAAGAGATTGCCGTCGTTTACGA-CTGGACGCTTGAACA 773
BSNT_01933___ 777 GGTAGAAAAAGAAATGAAAAAACTGGCGTTTGCTAAAAAGGTTGCCAAAG 826
|||.|||...|||||||||||.||.|||||.||....||.||.|..|.||
BL03343___yjb 774 GGTGGAACGGGAAATGAAAAAGCTCGCGTTCGCCCGCAAAGTCGAAAGAG 823
BSNT_01933___ 827 TGGAAGCCAAACACGGAATGTTTTGGAAGTCTCTCAGCACT-TATTCTGA 875
|||||||.||||||||.|||||.|| ||.|| ||| ..|
BL03343___yjb 824 TGGAAGCGAAACACGGCATGTTCTG-----------GCGCTATAT--AAA 860
BSNT_01933___ 876 TGAATATCA-----------------ATC-ATGTGAAAAATAG 900
||||.|||| ||| |||.|||||||||
BL03343___yjb 861 TGAACATCACGATGCCGGTCCGCTCTATCAATGCGAAAAATAG 903
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