Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01911 and BL03339

See Amino acid alignment / Visit BSNT_01911 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:26
# Commandline: needle
#    -asequence dna-align/BSNT_01911___trpS.1.5803.seq
#    -bsequence dna-align/BL03339___trpS.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01911___trpS-BL03339___trpS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01911___trpS-BL03339___trpS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01911___trpS
# 2: BL03339___trpS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1044
# Identity:     781/1044 (74.8%)
# Similarity:   781/1044 (74.8%)
# Gaps:          57/1044 ( 5.5%)
# Score: 3018.0
# 
#
#=======================================

BSNT_01911___      1 ATGAGCCTTTTTTATTATGTTTTAAGAAATGAGGTTGATGTTTTCATGAA     50
                                                                  |||||
BL03339___trp      1 ---------------------------------------------ATGAA      5

BSNT_01911___     51 ACAAACGATTTTTTCAGGCATTCAGCCAAGCGGCTCAGTGACGCTTGGCA    100
                     |.|||||||||||||.||.||.|||||.||||||||.||.||.||.||||
BL03339___trp      6 AAAAACGATTTTTTCCGGTATCCAGCCGAGCGGCTCTGTCACCCTCGGCA     55

BSNT_01911___    101 ACTATATCGGTGCAATGAAGCAGTTTGTCGAACTGCAGCATGATTATAAC    150
                     ||||||||||.||.|||||||||||||||||..|||||.||||.||.|||
BL03339___trp     56 ACTATATCGGAGCGATGAAGCAGTTTGTCGACTTGCAGGATGACTACAAC    105

BSNT_01911___    151 AGCTATTTTTGCATCGTGGACCAGCATGCGATAACTGTTCCTCAAGACCG    200
                     .|.||.||.||||||||.||.|||||.|||||.||.||.||.||.|||||
BL03339___trp    106 TGTTACTTCTGCATCGTCGATCAGCACGCGATCACAGTACCGCAGGACCG    155

BSNT_01911___    201 GCTTGAGCTTAGAAAGAATATCCGCAATCTCGCGGCGCTTTACTTAGCTG    250
                     |||.|.|||.||||||||.|||||.||.||.||.|||||.||.||.||..
BL03339___trp    156 GCTCGCGCTGAGAAAGAACATCCGGAACCTTGCCGCGCTGTATTTGGCGA    205

BSNT_01911___    251 TCGGACTTGATCCAGAAAAAGCAACATTGTTTATTCAGTCAGAGGTCCCC    300
                     ||||.||.|||||..|||||||.||..|||||||.||.||.||.||.||.
BL03339___trp    206 TCGGCCTCGATCCGAAAAAAGCGACGCTGTTTATCCAATCGGAAGTGCCT    255

BSNT_01911___    301 GCGCATGCGCAGGCCGGATGGATGATGCAGTGTGTCGCTTATATCGGCGA    350
                     ||.||.||.|||||.|||||||||.|.|||||||||||.||.||||||||
BL03339___trp    256 GCACACGCCCAGGCGGGATGGATGCTTCAGTGTGTCGCCTACATCGGCGA    305

BSNT_01911___    351 GCTTGAGCGGATGACTCAATTTAAGGACAAATCCAAAGGCAATGAAGCTG    400
                     |||||||||.|||||.||.|..||.||.|||||....||.||.|||||||
BL03339___trp    306 GCTTGAGCGCATGACGCAGTACAAAGATAAATCAGCCGGAAAAGAAGCTG    355

BSNT_01911___    401 TCGTCTCCGGCCTGTTAACATATCCGCCGCTGATGGCCGCTGATATTCTG    450
                     ||||||||||.||.||.||||||||.||..|.|||||.||.||.||||||
BL03339___trp    356 TCGTCTCCGGGCTTTTGACATATCCTCCATTAATGGCTGCGGACATTCTG    405

BSNT_01911___    451 CTGTACGGAACGGATCTTGTGCCTGTCGGCGAGGATCAAAAGCAGCACCT    500
                     ||.||.|||||.||..|.||.||||||||.||.|||||.||||||||.||
BL03339___trp    406 CTTTATGGAACAGACGTCGTCCCTGTCGGAGAAGATCAGAAGCAGCATCT    455

BSNT_01911___    501 TGAGCTGACGCGGAATCTT-GCAGAACGCTTCAACAAAAAATACAACGAC    549
                     |||..|.||.||||| ||| ||.||.||.|||||.||.|||||.||.|||
BL03339___trp    456 TGAATTAACCCGGAA-CTTGGCGGAGCGTTTCAATAAGAAATATAATGAC    504

BSNT_01911___    550 ATCTTTACGATTCCGGAAGTGAAAATTCCAAAAGTCGGTGCACGCATCAT    599
                     ||.||||||.|||||||.||.|||||.||.||.|||||.||.|||||.||
BL03339___trp    505 ATTTTTACGGTTCCGGAGGTTAAAATACCGAAGGTCGGCGCCCGCATTAT    554

BSNT_01911___    600 GTCTCTGAATGATCCGCTGAAGAAAATGAGCAAATCTGATCCGAATCAGA    649
                     |||.||....||.|||||.||.||.|||||||||||.||||||||.||.|
BL03339___trp    555 GTCACTTGCCGACCCGCTCAAAAAGATGAGCAAATCAGATCCGAACCAAA    604

BSNT_01911___    650 AAGCTTATATTACATTGCTGGATGAGCCGAAGCAGCTTGAAAAGAAAATC    699
                     ||||.|..||.||..||||.||.||.||.||.||||||||.||.||||||
BL03339___trp    605 AAGCGTTCATCACCCTGCTCGACGAACCAAAACAGCTTGAGAAAAAAATC    654

BSNT_01911___    700 AAAAGCGCTGTAACTGATTCTGAAGGCATTGTCAAATTTGATAAGGAAAA    749
                     |||||||||||.||.|||||.||.||.||.|||||||.||||||.|||||
BL03339___trp    655 AAAAGCGCTGTCACGGATTCCGACGGAATCGTCAAATATGATAAAGAAAA    704

BSNT_01911___    750 CAAACCGGGCGTTTCAAACCTTCTTACAATTTATTCAATTCTCGG-CAAT    798
                     ||||||.||.||.||.||||||||.||.||.|||||.|||||||| ||| 
BL03339___trp    705 CAAACCCGGTGTATCCAACCTTCTGACGATCTATTCGATTCTCGGACAA-    753

BSNT_01911___    799 ACGACAATTGAAGAGCTTGAAGCAAAGTACGAAGGAAAAGGCTACGGCGA    848
                     .|..||||.|||||||||||||||||.||||||||.||||||||||||||
BL03339___trp    754 GCCTCAATCGAAGAGCTTGAAGCAAAATACGAAGGCAAAGGCTACGGCGA    803

BSNT_01911___    849 GTTTAAAGGTGATTTGGCAGAAGTCGT----GGTGAACGCATTAAAACCG    894
                     .||||||...||..|.||.||||||||    ||    |||..|.||||||
BL03339___trp    804 ATTTAAATCAGACCTTGCCGAAGTCGTCATCGG----CGCGCTGAAACCG    849

BSNT_01911___    895 ATCCAGGACCGCTATTACGAGCTGATAGAATCTGAGGAATTAGACCGGAT    944
                     ||.||.|||||.||..||||..||||.||||||||.||..|.||||||||
BL03339___trp    850 ATTCAAGACCGTTACCACGAATTGATCGAATCTGAAGAGCTGGACCGGAT    899

BSNT_01911___    945 TCTTGATGAAGGCGCGGAACGGGCGAACCGGACAGCAAACAAAATGCTGA    994
                     |.|.||.||||||||.|||||.||.||.|..|||||||||||.|||||.|
BL03339___trp    900 TTTGGACGAAGGCGCCGAACGCGCAAATCAAACAGCAAACAAGATGCTAA    949

BSNT_01911___    995 AAAAAATGGAGAATGCCATGGGTCTTGGAAGAAAAAGACGCTAA   1038
                     ||||||||||.||.||.|||||.||.||..||||||||||||.|
BL03339___trp    950 AAAAAATGGAAAACGCGATGGGACTCGGCCGAAAAAGACGCTGA    993


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