Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01929 and BL03336
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:27
# Commandline: needle
# -asequence dna-align/BSNT_01929___yjbF.1.5803.seq
# -bsequence dna-align/BL03336___yjbF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01929___yjbF-BL03336___yjbF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01929___yjbF-BL03336___yjbF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01929___yjbF
# 2: BL03336___yjbF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1342
# Identity: 716/1342 (53.4%)
# Similarity: 716/1342 (53.4%)
# Gaps: 383/1342 (28.5%)
# Score: 1523.5
#
#
#=======================================
BSNT_01929___ 1 TTGTTTAGTGCTGTGA---CTGAAGACGG--CCAAATGTTTCACCTTCTA 45
.||||.|||||..||| .|.|||.||| |||..|| ||||...
BL03336___yjb 1 ATGTTCAGTGCAATGATCGATCAAGGCGGGACCATCTG-----CCTTGCC 45
BSNT_01929___ 46 GGCGCTCAGCAAAACCAGAA-AT-TAAAGCG---GAGA----------CG 80
|.||...| ||||.|| ||| || |.||||| |||| |
BL03336___yjb 46 GACGGATA-CAAAGCC-GAAGATCTCAAGCGATTGAGAAAAAGACATGC- 92
BSNT_01929___ 81 GTTCTTCTGTCCGGTATGCGGGGGAGAGCTAGCTGTGAAGCTCGGACTTC 130
.||.|.|||.|||||.|||.|| |||||| ||| |||.|.
BL03336___yjb 93 ATTTTACTGCCCGGTGTGCCGG-----------TGTGAA-CTC-GACCTG 129
BSNT_01929___ 131 AAA------------AAGC-GCCGCATTTTGCCCATAAACAG-----AAC 162
||| |||| .||||||||.||.|||||.|.| |.|
BL03336___yjb 130 AAAATCGGTTCCGTCAAGCTTCCGCATTTCGCTCATAAGCCGGATGCAGC 179
BSNT_01929___ 163 AAGTCC--TGCTCCATAGACATCGAACCGGAAAGCGCCTACCACTTAGAA 210
|.|||| |||.|||| ||||||||.|||.||||.|||.|..||
BL03336___yjb 180 ATGTCCGGTGCCCCAT-------GAACCGGAGAGCCCCTATCACCTGAAA 222
BSNT_01929___ 211 GGAAAAAGACAGCTGTATGTATGGCTGAAAACACAA----------CGG- 249
|||||..|.|.|.||||.|.||||||....|.|||| |||
BL03336___yjb 223 GGAAAGCGGCTGTTGTACGAATGGCTTGGCAGACAAGGACTCCGCCCGGT 272
BSNT_01929___ 250 GCTTCACCAATATTGGAGCCGTATAT--AAGGACA-ATCAACCAAAGACC 296
|||| ||.||||||.| ||| | ||||..|||||.||
BL03336___yjb 273 GCTT-----------GAACCGTATTTGCAAG---AGATCAGACAAAGGCC 308
BSNT_01929___ 297 GGACGTCATGGCAAGAATCAAGGA-----GCATATGCTTGCTGTTGAATA 341
.||..|..| ||..||| ||.||| .|| |.||||.|||||||.
BL03336___yjb 309 CGATTTGCT-GCTGGAA-CACGGAACCCGCCA---GGTTGCGGTTGAATT 353
BSNT_01929___ 342 TCAATGCGCCACTATC---GCTCCAGATGTCTTTCAAAAGCGGACAGAGG 388
||||||.||.|.|.|| ||..||| .||.|..||||| ||||.||.|
BL03336___yjb 354 TCAATGTGCGAATCTCAATGCCGCAG-CGTATCGCAAAA--GGACCGAAG 400
BSNT_01929___ 389 GCT---TCAAACAAGAAGGAATC-ATTCCGCAGTGGATTATGGGATACAG 434
||| |||.|| ..|||||| |..|||.| ||||||.|.||....|.
BL03336___yjb 401 GCTTTCTCAGAC---TGGGAATCGAGCCCGTA-TGGATTCTCGGCGGAAA 446
BSNT_01929___ 435 CCGCTTAAAACG---GACTGCTTCGTCCTTT-TATCAGCTTTCAGC-TTT 479
|||..||||||| |||.| |...||| |.||||||||| || .||
BL03336___yjb 447 CCGGATAAAACGCTTGACGG----GGGATTTATTTCAGCTTTC-GCGGTT 491
BSNT_01929___ 480 TCATTGGCAGTTTAT----CAATG---CAAGTCCATACAGAGAGCTGATA 522
|||.||||||||.|| .||.| ||||.| |..|.||||..|.
BL03336___yjb 492 TCACTGGCAGTTCATTCAGAAAAGCGACAAGCC----CCCAAAGCTCCTG 537
BSNT_01929___ 523 TGTTATTGTCCTG----AAAGGCGTTCTTTTC-TCCGGCTCAGCCACATC 567
|.||.|||.||.| |||||| |||| ||...|||...|||.||
BL03336___yjb 538 TTTTTTTGCCCCGAACAAAAGGC-----TTTCATCATCCTCGAACACCTC 582
BSNT_01929___ 568 ATTCCATTCTACACAAAC----CATTCTTATTCCTCAGTCCAAACGATCC 613
|||||.||..|.|||||| || |||.|| |||...||.|..
BL03336___yjb 583 ATTCCCTTTCAAACAAACAAAACA-------TCCGCA-TCCTTGCGCTTT 624
BSNT_01929___ 614 CTATCCATCGGGCAGGTGCAGACGATCT----TTTTTTCACTGAAC-CGA 658
|| ||| ||..||.|..||| |.|| |..|.|.||.|||| .||
BL03336___yjb 625 CT-TCC-TCTTGCTGAAGCA----AGCTGGCGTAATGTAACAGAACGAGA 668
BSNT_01929___ 659 AACCC----------TCAATTCAATATTCAGGCTGGACGAAAG--CGATT 696
||.|| .||..|||| |||||||| .|||| | ||.
BL03336___yjb 669 AAGCCGTTCGCCTCTCCAGCTCAA-----AGGCTGGA-AAAAGAAC-ATC 711
BSNT_01929___ 697 CACCGTTTTCGCCATAAACCCCATCGG----------TTTAACTCAAAGG 736
|.|.|.||||| .|| .|||| |||| |||||.|
BL03336___yjb 712 CTCAGCTTTCG-GAT-------GTCGGCCGTGCGTTTTTTA--TCAAAAG 751
BSNT_01929___ 737 AAATAAATCGCCTTAGGCTG--CTGTTTTATGAGAAGCGGCAGACATCTT 784
|||..||.|...|| ||.| ||.||||||||.||.|..||| |||
BL03336___yjb 752 AAACGAAGCAGATT--GCCGCCCTCTTTTATGAAAATCATCAG----CTT 795
BSNT_01929___ 785 ----TTTCTTTTCTGCCGACTGAAGTGTTTGTTCCTGTTAGAAAAGGGGC 830
|..|.|||.|.||..|.||||..|||.|.|| ||.||
BL03336___yjb 796 CCGCTCCCGTTTTTTCCCTCAGAAGCCTTTCTCCC----------GGTGC 835
BSNT_01929___ 831 AGT---------TTTTAAGAGT------CCGGTTTTTGTGTGGCAGGGGT 865
.|| |||| | |||||||.|||.|||||.||||
BL03336___yjb 836 CGTCAGGCTATATTTT-----TGCCCACCCGGTTTATGTATGGCAAGGGT 880
BSNT_01929___ 866 TTCTGTATTTGTTTATGACGGATCTTGGAGGTAAACGTGCGCCAATTCGT 915
..||.|.|||.|||||.|||.|.|.|| ||.|.|
BL03336___yjb 881 ACCTTTTTTTATTTATAACGAAGCATG-----------------ATACAT 913
BSNT_01929___ 916 TTTTCAGCCGTTTTGCAGCAGTGCAAACTGCACATTCATAATAAGAACAT 965
|| .||| ||||..||||.| ||||..|||.|.|| |
BL03336___yjb 914 TT---CGCC------------TGCAGTCTGCGC-TTCACTATATGGAC-T 946
BSNT_01929___ 966 TGCAC-TC---------AGGTT-----TGA-ATGCAGCG--------AAG 991
.||.| || |||.| ||| |||.|||| |.|
BL03336___yjb 947 GGCTCATCAAGGGCAAAAGGCTGAAGCTGAGATGGAGCGGGCGGCAAACG 996
BSNT_01929___ 992 AGTGTCTTTCAGAAG----CGGTTAAACAGTATATTGATTTTTTGTGCAA 1037
..|| |.||.| ||||.|| ||.|||..|||||||...||
BL03336___yjb 997 GCTG-----CGGATGCCGTCGGTGAA----TACATTTGTTTTTTGCATAA 1037
BSNT_01929___ 1038 GAAGGGATTTTTAAGG-GAGACTCAGAAAGA--------AGTATATGTGC 1078
.||.|||||||| || ||| |||||| |.||| |..||
BL03336___yjb 1038 AAAAGGATTTTT--GGTGAG-----GAAAGAGGAATTTTATTAT-TCCGC 1079
BSNT_01929___ 1079 TGAATC-----------AGCCTGCAGGCGGCATACACTCCATGCAGGATC 1117
.|..|| |||| |||| .|..|||..|
BL03336___yjb 1080 GGGTTCTTTTGTTCCGGAGCC-----GCGG----------TTAGAGGCGC 1114
BSNT_01929___ 1118 TCATAGAAAGAGACCGCAGCTG-------TTTTATAGAATGA 1152
|..||.||||.|| || ||||...||||||
BL03336___yjb 1115 TGTTAAAAAGGGA-------TGAACATTATTTTTCCGAATGA 1149
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