Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01926 and BL03330
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:27
# Commandline: needle
# -asequence dna-align/BSNT_01926___mecA.1.5803.seq
# -bsequence dna-align/BL03330___mecA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01926___mecA-BL03330___mecA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01926___mecA-BL03330___mecA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01926___mecA
# 2: BL03330___mecA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 677
# Identity: 499/677 (73.7%)
# Similarity: 499/677 (73.7%)
# Gaps: 58/677 ( 8.6%)
# Score: 1873.5
#
#
#=======================================
BSNT_01926___ 1 ATGGAAATTGAAAGAATTAACGAGCATACAGTAAAATTTTATATGTCTTA 50
||||||||.||||||||.|||||.||.||.||.||.||||||||.||.||
BL03330___mec 1 ATGGAAATCGAAAGAATAAACGAACACACGGTTAAGTTTTATATTTCCTA 50
BSNT_01926___ 51 CGGAGATATTGAAGATCGCGGTTTTGACAGAGAAGAAATTTGGTATAACC 100
|||.|||||.|||||.|||||.|||||||||||||||||||||||.||.|
BL03330___mec 51 CGGTGATATCGAAGACCGCGGGTTTGACAGAGAAGAAATTTGGTACAATC 100
BSNT_01926___ 101 GTGAGCGCAGTGAAGAACTATTCTGGGAAGTCATGGATGAAGTTCATGAA 150
|.||.|||||||||||.||.||.||||||.|.|||||.|||||.||.|||
BL03330___mec 101 GAGAACGCAGTGAAGAGCTTTTTTGGGAAATGATGGACGAAGTGCACGAA 150
BSNT_01926___ 151 GAAGAGGAATTCGCTGTGGAAGGCCCACTTTGGATTCAAGTTCAGGCACT 200
|||||.||.||.||.||.||||||||.||||||||||||||.|||||.||
BL03330___mec 151 GAAGAAGAGTTTGCCGTTGAAGGCCCCCTTTGGATTCAAGTGCAGGCCCT 200
BSNT_01926___ 201 GGACAAAGGATTAGAAATCATCGTCACAAAAGCCCAGCTTTCCAAAGACG 250
.|||||.|||||.||||||||.||.||||.|||.|||.|.||||||||||
BL03330___mec 201 TGACAAGGGATTGGAAATCATTGTGACAAGAGCTCAGTTGTCCAAAGACG 250
BSNT_01926___ 251 GACAAAAGCTCGAACTGCCGATTCCTGAGGATAAAAAGCAAGAACCAGCA 300
||||||||||.|||||||||||||||||.|||||| ||.|||||
BL03330___mec 251 GACAAAAGCTGGAACTGCCGATTCCTGAAGATAAA-------AAACAGCA 293
BSNT_01926___ 301 T----CTGAGGA---TCTTGACGCCTTGCTGGATGATTTCCAGAAAGAAG 343
| |.||.|| .|||||.||.|||||.||.||.||.||.|||||||
BL03330___mec 294 TGTAGCAGAAGAAAGCCTTGATGCTTTGCTTGACGACTTTCAAAAAGAAG 343
BSNT_01926___ 344 AGCAAGCCGTCAATCAGGAAGAGAAGGAGCAAAAGCTTCAATTTGTCTTG 393
||||.|| |||| |||||.||.||.||.|||||.||.
BL03330___mec 344 AGCAGGC--------------AGAA-GAGCAGAAACTGCAGTTTGTTTTA 378
BSNT_01926___ 394 CGATTTGGCGATTTTGAGGATGTTATTTCTCTATCTAAATTGAACGTTAA 443
..|||||.|||||||||||||.|.||.||.||.||.|||.||...||.|.
BL03330___mec 379 AAATTTGACGATTTTGAGGATTTAATCTCACTGTCAAAAATGTCTGTCAG 428
BSNT_01926___ 444 CGGAAGCAAAACGACTTTATATTCGTTTGAGAACCGATATTATTTATATG 493
|||..||.|||||||.||.||.||...|||.|||||.||||||||||..|
BL03330___mec 429 CGGTTGCCAAACGACATTGTACTCTCATGAAAACCGCTATTATTTATTCG 478
BSNT_01926___ 494 TAGATTTTTGCAAT---ATGACTGATGAAGAGGTTGAAAATCAGCTAAGC 540
|.||||| |||| .||.|||||||||||||.|||||.|||||.|||
BL03330___mec 479 TGGATTT---CAATGAACTGCCTGATGAAGAGGTGGAAAACCAGCTGAGC 525
BSNT_01926___ 541 ATCCTGCTGGAGTACGCAACTGAATCCTCAATCAG---------CATACA 581
||.||||||||.||.||..|.||| |||| || ||||
BL03330___mec 526 ATTCTGCTGGAATATGCCTCAGAA---TCAA--AGATGACGATTCATA-- 568
BSNT_01926___ 582 CCGT-CTTGAAGAGTACGGCAAGCTGATTATTTCAGAGCATGCTCTAGAA 630
| ||..|||||||.||.||.||||||....|.||.||||||||..|.
BL03330___mec 569 ---TGCTGAAAGAGTATGGAAAACTGATTGCAGCGGATCATGCTCTTCAT 615
BSNT_01926___ 631 GCGATAAAAAAACACTTTGCATCATAG 657
.|.||||||||.||||||||||.|
BL03330___mec 616 ACAATAAAAAAGCACTTTGCATAA--- 639
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