Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01926 and BL03330

See Amino acid alignment / Visit BSNT_01926 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:27
# Commandline: needle
#    -asequence dna-align/BSNT_01926___mecA.1.5803.seq
#    -bsequence dna-align/BL03330___mecA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01926___mecA-BL03330___mecA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01926___mecA-BL03330___mecA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01926___mecA
# 2: BL03330___mecA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 677
# Identity:     499/677 (73.7%)
# Similarity:   499/677 (73.7%)
# Gaps:          58/677 ( 8.6%)
# Score: 1873.5
# 
#
#=======================================

BSNT_01926___      1 ATGGAAATTGAAAGAATTAACGAGCATACAGTAAAATTTTATATGTCTTA     50
                     ||||||||.||||||||.|||||.||.||.||.||.||||||||.||.||
BL03330___mec      1 ATGGAAATCGAAAGAATAAACGAACACACGGTTAAGTTTTATATTTCCTA     50

BSNT_01926___     51 CGGAGATATTGAAGATCGCGGTTTTGACAGAGAAGAAATTTGGTATAACC    100
                     |||.|||||.|||||.|||||.|||||||||||||||||||||||.||.|
BL03330___mec     51 CGGTGATATCGAAGACCGCGGGTTTGACAGAGAAGAAATTTGGTACAATC    100

BSNT_01926___    101 GTGAGCGCAGTGAAGAACTATTCTGGGAAGTCATGGATGAAGTTCATGAA    150
                     |.||.|||||||||||.||.||.||||||.|.|||||.|||||.||.|||
BL03330___mec    101 GAGAACGCAGTGAAGAGCTTTTTTGGGAAATGATGGACGAAGTGCACGAA    150

BSNT_01926___    151 GAAGAGGAATTCGCTGTGGAAGGCCCACTTTGGATTCAAGTTCAGGCACT    200
                     |||||.||.||.||.||.||||||||.||||||||||||||.|||||.||
BL03330___mec    151 GAAGAAGAGTTTGCCGTTGAAGGCCCCCTTTGGATTCAAGTGCAGGCCCT    200

BSNT_01926___    201 GGACAAAGGATTAGAAATCATCGTCACAAAAGCCCAGCTTTCCAAAGACG    250
                     .|||||.|||||.||||||||.||.||||.|||.|||.|.||||||||||
BL03330___mec    201 TGACAAGGGATTGGAAATCATTGTGACAAGAGCTCAGTTGTCCAAAGACG    250

BSNT_01926___    251 GACAAAAGCTCGAACTGCCGATTCCTGAGGATAAAAAGCAAGAACCAGCA    300
                     ||||||||||.|||||||||||||||||.||||||       ||.|||||
BL03330___mec    251 GACAAAAGCTGGAACTGCCGATTCCTGAAGATAAA-------AAACAGCA    293

BSNT_01926___    301 T----CTGAGGA---TCTTGACGCCTTGCTGGATGATTTCCAGAAAGAAG    343
                     |    |.||.||   .|||||.||.|||||.||.||.||.||.|||||||
BL03330___mec    294 TGTAGCAGAAGAAAGCCTTGATGCTTTGCTTGACGACTTTCAAAAAGAAG    343

BSNT_01926___    344 AGCAAGCCGTCAATCAGGAAGAGAAGGAGCAAAAGCTTCAATTTGTCTTG    393
                     ||||.||              |||| |||||.||.||.||.|||||.||.
BL03330___mec    344 AGCAGGC--------------AGAA-GAGCAGAAACTGCAGTTTGTTTTA    378

BSNT_01926___    394 CGATTTGGCGATTTTGAGGATGTTATTTCTCTATCTAAATTGAACGTTAA    443
                     ..|||||.|||||||||||||.|.||.||.||.||.|||.||...||.|.
BL03330___mec    379 AAATTTGACGATTTTGAGGATTTAATCTCACTGTCAAAAATGTCTGTCAG    428

BSNT_01926___    444 CGGAAGCAAAACGACTTTATATTCGTTTGAGAACCGATATTATTTATATG    493
                     |||..||.|||||||.||.||.||...|||.|||||.||||||||||..|
BL03330___mec    429 CGGTTGCCAAACGACATTGTACTCTCATGAAAACCGCTATTATTTATTCG    478

BSNT_01926___    494 TAGATTTTTGCAAT---ATGACTGATGAAGAGGTTGAAAATCAGCTAAGC    540
                     |.|||||   ||||   .||.|||||||||||||.|||||.|||||.|||
BL03330___mec    479 TGGATTT---CAATGAACTGCCTGATGAAGAGGTGGAAAACCAGCTGAGC    525

BSNT_01926___    541 ATCCTGCTGGAGTACGCAACTGAATCCTCAATCAG---------CATACA    581
                     ||.||||||||.||.||..|.|||   ||||  ||         ||||  
BL03330___mec    526 ATTCTGCTGGAATATGCCTCAGAA---TCAA--AGATGACGATTCATA--    568

BSNT_01926___    582 CCGT-CTTGAAGAGTACGGCAAGCTGATTATTTCAGAGCATGCTCTAGAA    630
                        | ||..|||||||.||.||.||||||....|.||.||||||||..|.
BL03330___mec    569 ---TGCTGAAAGAGTATGGAAAACTGATTGCAGCGGATCATGCTCTTCAT    615

BSNT_01926___    631 GCGATAAAAAAACACTTTGCATCATAG    657
                     .|.||||||||.||||||||||.|   
BL03330___mec    616 ACAATAAAAAAGCACTTTGCATAA---    639


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