Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01918 and BL03327
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:27
# Commandline: needle
# -asequence dna-align/BSNT_01918___oppF.1.5803.seq
# -bsequence dna-align/BL03327___oppF.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01918___oppF-BL03327___oppF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01918___oppF-BL03327___oppF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01918___oppF
# 2: BL03327___oppF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 936
# Identity: 705/936 (75.3%)
# Similarity: 705/936 (75.3%)
# Gaps: 30/936 ( 3.2%)
# Score: 2592.0
#
#
#=======================================
BSNT_01918___ 1 TTGACTGAAAAACTATTAGAAATCAAACATTTAAAACAGCACTTTGTC-A 49
.||.|.||||||||..|.||||||||..||||||||||||||||| || |
BL03327___opp 1 ATGGCAGAAAAACTGCTCGAAATCAAGAATTTAAAACAGCACTTT-TCAA 49
BSNT_01918___ 50 CGCCGAGGGGAACGGTTAAGGCTGTAGATGATTTATCATTTGATATCTAT 99
||||||..||.|..||.||.|||||.||.|...|.||.|||||.||.||.
BL03327___opp 50 CGCCGAAAGGGATTGTAAAAGCTGTTGACGGAATCTCTTTTGACATTTAC 99
BSNT_01918___ 100 AAAGGTGAAACATTAGGGCTGGTTGGTGAATCTGGCTGCGGTAAATCGAC 149
|||||.|||||..|.||.||.||.||.||.||.||||||||.||.|||||
BL03327___opp 100 AAAGGGGAAACGCTCGGTCTTGTCGGAGAGTCCGGCTGCGGAAAGTCGAC 149
BSNT_01918___ 150 AACAGGCCGAAGCATTATCCGGCTGTACGAAGCAACCGATGGTGAGGTGC 199
.||.|||||....||.||.||..||||..||||.||....||.||.||..
BL03327___opp 150 GACCGGCCGTTCGATCATTCGTTTGTATCAAGCGACTTCCGGAGAAGTCT 199
BSNT_01918___ 200 TGTTTAACGGTGAAAATGTGCACGGGAGAAAATC-GCGGAAAAAGCTGCT 248
|||||||.||..|.|||||.||||..|.|||.|| || .||..|.||.||
BL03327___opp 200 TGTTTAAGGGAAAGAATGTCCACGACAAAAAGTCTGC-CAAGGACCTTCT 248
BSNT_01918___ 249 GGAATTCAACCGCAAAATGCAGATGATTTTCCAAGACCCCTATGCATCCC 298
.|||||||||||.||.||||||||||||||.||.|||||.|||||||||.
BL03327___opp 249 CGAATTCAACCGGAAGATGCAGATGATTTTTCAGGACCCGTATGCATCCT 298
BSNT_01918___ 299 TGAATCCGAGAATGACAGTTGCTGATATTATTGCTGAAGGTCTTGATATT 348
||||||||.|.|||||.|||||.||.||.||.||.||||||.||||.||.
BL03327___opp 299 TGAATCCGCGGATGACGGTTGCCGACATCATCGCAGAAGGTATTGACATC 348
BSNT_01918___ 349 CATAAGC----TGGCAAAAACGAAAAAAGAGCGGATGCAGAGGGTTCATG 394
|| | ||||.||||||||||||||.|||.|..||.|.|||||||
BL03327___opp 349 CA----CGGTTTGGCCAAAACGAAAAAAGAACGGCTTGAGCGCGTTCATG 394
BSNT_01918___ 395 AACTATTGGAAACA-----GTTGGTTTAAACAAGGAACACGCGAACCGCT 439
||||..| || ||.||.|||||.||.||||||||||||||||
BL03327___opp 395 AACTCCT-----CAATCTCGTCGGCTTAAATAAAGAACACGCGAACCGCT 439
BSNT_01918___ 440 ATCCGCATGAATTTTCCGGCGGCCAGCGCCAAAGAATCGGGATTGCCAGA 489
|||||||.||.|||||||||||.||||||||..|.||.||.||.||.||.
BL03327___opp 440 ATCCGCACGAGTTTTCCGGCGGACAGCGCCAGCGGATTGGAATCGCAAGG 489
BSNT_01918___ 490 GCTCTTGCTGTTGATCCGGAATTCATTATCGCGGATGAGCCGATTTCCGC 539
||.||.||.||.||.|||||||||||.||.||.|||||.|||||.||.||
BL03327___opp 490 GCGCTGGCGGTCGAACCGGAATTCATCATTGCCGATGAACCGATCTCTGC 539
BSNT_01918___ 540 TTTGGATGTATCCATTCAAGCGCAGGTCGTGAATTTAATGAAAGAACTGC 589
..||||.||.||||||||.|||||.|||||.|||||||||||.||..|||
BL03327___opp 540 ACTGGACGTGTCCATTCAGGCGCAAGTCGTCAATTTAATGAAGGATTTGC 589
BSNT_01918___ 590 AAAAAGAAAAAGGGCTCACATACCTGTTTATTGCCCACGATTTATCGATG 639
||||.||||.|||.||.||||||||.||.||.||.||||||.|.||||||
BL03327___opp 590 AAAAGGAAAGAGGACTGACATACCTTTTCATCGCTCACGATCTGTCGATG 639
BSNT_01918___ 640 GTCAAATACATCAGTGACCGCATTGGCGTCATGTATTTCGGGAAACTGGT 689
||||||||.|||||.|||.|.||.||||||||||||||||||||.||.||
BL03327___opp 640 GTCAAATATATCAGCGACAGGATCGGCGTCATGTATTTCGGGAAGCTTGT 689
BSNT_01918___ 690 TGAGCTTGCGCCGGCAGATGAGCTTTATGAAAATCCGCTTCACCCATATA 739
|||..|.||||||||||||||..|.|||||||||||||||||.||.||||
BL03327___opp 690 TGAATTGGCGCCGGCAGATGAATTGTATGAAAATCCGCTTCATCCGTATA 739
BSNT_01918___ 740 CAAAATCATTGCTTTCTGCGATTCCGCTTCCAGATCCAGACTATGAGAGA 789
||.|||||||||||||.||.|||||.||.||.|||||.||.||||||.|.
BL03327___opp 740 CACAATCATTGCTTTCCGCCATTCCTCTGCCTGATCCGGATTATGAGCGC 789
BSNT_01918___ 790 AATCGCGTTCGCCAGAAATATGATCCGTCCGTCCATCA-ATTAAAGGATG 838
|..|||||.||..|||..|||||||||||||||||||| .|.||||| .|
BL03327___opp 790 ACGCGCGTGCGGAAGACGTATGATCCGTCCGTCCATCAGCTGAAAGG-CG 838
BSNT_01918___ 839 GGGAAACGATGGAATTCCGTGAAGTCAAACCGGGACATTTTGTGATGTGC 888
..|||..||||||..||||.|||||.||.||.||.|||||.||.|||||.
BL03327___opp 839 ACGAACAGATGGAGCTCCGCGAAGTAAAGCCCGGCCATTTCGTCATGTGT 888
BSNT_01918___ 889 ACGGAAGCCGAATTTAAAGCTTTT---TC---ATGA 918
||.||.|..|||||||||||.|.| || ||.|
BL03327___opp 889 ACAGAGGAAGAATTTAAAGCCTATCAATCCAAATAA 924
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