Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01916 and BL03325

See Amino acid alignment / Visit BSNT_01916 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:26
# Commandline: needle
#    -asequence dna-align/BSNT_01916___oppC.1.5803.seq
#    -bsequence dna-align/BL03325___oppC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01916___oppC-BL03325___oppC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01916___oppC-BL03325___oppC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01916___oppC
# 2: BL03325___oppC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 965
# Identity:     656/965 (68.0%)
# Similarity:   656/965 (68.0%)
# Gaps:          94/965 ( 9.7%)
# Score: 2116.5
# 
#
#=======================================

BSNT_01916___      1 ATGCAGAACATTCCGAAAAACATGTTTGAACCAGCCGC----------AG     40
                     ||||||.|.||.||.|||.|||||||||||||.||.||          ||
BL03325___opp      1 ATGCAGCAAATACCAAAAGACATGTTTGAACCTGCAGCTGTTGACCATAG     50

BSNT_01916___     41 CGAATGCCGGCGATGCAGAAAAAAT----AAGTAAAAAGAGCCTTTCCCT     86
                     ||||          ||.|||||.||    |||.||||    ||||||..|
BL03325___opp     51 CGAA----------GCCGAAAAGATCTCAAAGAAAAA----CCTTTCTTT     86

BSNT_01916___     87 CTGGAAAGATGCG-ATGCTTCGCTTCCGCAG---------CAATAAGCTT    126
                     .||||.|||  || ||.|||        .||         .||.|||||.
BL03325___opp     87 TTGGACAGA--CGTATTCTT--------GAGATTTAAAGAAAACAAGCTG    126

BSNT_01916___    127 GCAATGGTCGGGCTTATTATTATCGTGCTCATTATC---CTTATGGCAAT    173
                     ||..||.|.||.||..|..||   .||.||.|.|||   ||.|||||.||
BL03325___opp    127 GCGCTGTTTGGACTGGTGGTT---CTGATCCTGATCGCTCTGATGGCTAT    173

BSNT_01916___    174 TTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTA-    222
                     .||.||||||.||||||||||.|.|.|.|||..|...||..||   ||| 
BL03325___opp    174 CTTCGCGCCGGTGTTCTCAAGCTTTCAATATGAAGAAACAGAT---TTAA    220

BSNT_01916___    223 --AATGCGGATAAGCCCCCTTCAAAA-----GATCACTGGTTCGGAACAG    265
                       ||||||.|..||||.||     ||     ||.||||||||.|||||||
BL03325___opp    221 CGAATGCGAACCAGCCGCC-----AAGCGGTGAGCACTGGTTTGGAACAG    265

BSNT_01916___    266 ATGATCTTGGGCGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATC    315
                     ||||.|||||..|||||.|.|||||||||||||||||.||.||.||.|||
BL03325___opp    266 ATGACCTTGGAAGGGACGTATTCGTCCGTACATGGGTCGGCGCCCGCATC    315

BSNT_01916___    316 T------CAATCTTTATCGGTGTTGCAGCTGCTGTTCTTGA--TTTGCTG    357
                     |      |||||....|||.||.|||    ||||.||  ||  |||  ||
BL03325___opp    316 TCGCTGACAATCGGACTCGCTGCTGC----GCTGATC--GACGTTT--TG    357

BSNT_01916___    358 ATCGGCGTCATTTGGGGGAGC-ATTTCAGGCTTCCGCGGAGGCAGAACGG    406
                     |||||.||.||.| ||||.|| |||||.|||.||.|.||.||..|.||||
BL03325___opp    358 ATCGGTGTGATAT-GGGGTGCGATTTCCGGCATCAGAGGCGGACGTACGG    406

BSNT_01916___    407 ACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTA    456
                     |.|||||.||||||.|.||.||.|||||..|.|||||..|||||||.|||
BL03325___opp    407 ATGAAATTATGATGAGAATAGCAGATATTTTATGGGCGATTCCTTCTTTA    456

BSNT_01916___    457 TTAATGGTTATCTTACTGATGGTTGTTCTTCCGAAAGGTCTATTTACGAT    506
                     ||||||...|||.|.|||.|.||||||.|....|||||.||..|.|||||
BL03325___opp    457 TTAATGACCATCCTGCTGCTCGTTGTTATGGGAAAAGGCCTGATCACGAT    506

BSNT_01916___    507 TATTATTGCCATGACGATTACGGGCTGGATTAATATGGCCAGAATCGTGC    556
                     .||..|.||.|||...||||||||||||||.||.|||||.||||||||.|
BL03325___opp    507 GATCGTGGCGATGGTTATTACGGGCTGGATCAACATGGCGAGAATCGTCC    556

BSNT_01916___    557 GCGGACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAG    606
                     |.||.|||||.||.|||||.||.||||||||||..||.||.||.||| ||
BL03325___opp    557 GGGGCCAAGTACTCCAGCTTAAAAATCAGGAGTTCGTACTCGCCTCA-AG    605

BSNT_01916___    607 -ACACTGGGTGC-AAAAACATCCCGTCTTCTGTTTAAACATATCGTGCCA    654
                      |||.||||.|| |||||| ||.||..||.|....||.||..|..||||.
BL03325___opp    606 AACATTGGGAGCGAAAAAC-TCGCGCATTATCAGAAAGCACCTGCTGCCC    654

BSNT_01916___    655 AACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGC    704
                     |||...|||.|..|.||.||||||||.||||||.|.||.||||||||.||
BL03325___opp    655 AACATCATGAGCCCGATCTTGGTCACCATGACATTAACCGTTCCTACGGC    704

BSNT_01916___    705 GATTTT-TACAGAAGCCTTTTTAAGCTATTTGGGACTCGGTGTTCCGGCT    753
                     .||||| || .||.||.|||||||||||..|.||.|||||.||||||...
BL03325___opp    705 TATTTTCTA-TGAGGCGTTTTTAAGCTACCTCGGCCTCGGGGTTCCGCAG    753

BSNT_01916___    754 CCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATTGAC    803
                     |||||.||||||||||||||||||||..|.|||||..|.|..|.||||..
BL03325___opp    754 CCGCTTGCAAGCTGGGGAACGATGGCAACAGACGGTGTTCAGGGATTGGA    803

BSNT_01916___    804 CTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAA    853
                     .||.||.||.|||||..|.||||||||.||....||||||||..|.||.|
BL03325___opp    804 ATACTACCCTTGGCGCCTGTTCTTCCCGGCTACTTTTATCTGTCTGACCA    853

BSNT_01916___    854 TGTTTGGCTTTAACGTTGTCGGCGACGGATTAAGAGACGCATTGGATCCT    903
                     ||||||..||.||||||.|||||||||||.|..|.|||||.||.|||||.
BL03325___opp    854 TGTTTGCATTCAACGTTATCGGCGACGGACTGCGCGACGCTTTAGATCCG    903

BSNT_01916___    904 AAGTTACGTAAATAA    918
                     |||.|.|||||||||
BL03325___opp    904 AAGCTGCGTAAATAA    918


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