Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01916 and BL03325
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:26
# Commandline: needle
# -asequence dna-align/BSNT_01916___oppC.1.5803.seq
# -bsequence dna-align/BL03325___oppC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01916___oppC-BL03325___oppC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01916___oppC-BL03325___oppC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01916___oppC
# 2: BL03325___oppC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 965
# Identity: 656/965 (68.0%)
# Similarity: 656/965 (68.0%)
# Gaps: 94/965 ( 9.7%)
# Score: 2116.5
#
#
#=======================================
BSNT_01916___ 1 ATGCAGAACATTCCGAAAAACATGTTTGAACCAGCCGC----------AG 40
||||||.|.||.||.|||.|||||||||||||.||.|| ||
BL03325___opp 1 ATGCAGCAAATACCAAAAGACATGTTTGAACCTGCAGCTGTTGACCATAG 50
BSNT_01916___ 41 CGAATGCCGGCGATGCAGAAAAAAT----AAGTAAAAAGAGCCTTTCCCT 86
|||| ||.|||||.|| |||.|||| ||||||..|
BL03325___opp 51 CGAA----------GCCGAAAAGATCTCAAAGAAAAA----CCTTTCTTT 86
BSNT_01916___ 87 CTGGAAAGATGCG-ATGCTTCGCTTCCGCAG---------CAATAAGCTT 126
.||||.||| || ||.||| .|| .||.|||||.
BL03325___opp 87 TTGGACAGA--CGTATTCTT--------GAGATTTAAAGAAAACAAGCTG 126
BSNT_01916___ 127 GCAATGGTCGGGCTTATTATTATCGTGCTCATTATC---CTTATGGCAAT 173
||..||.|.||.||..|..|| .||.||.|.||| ||.|||||.||
BL03325___opp 127 GCGCTGTTTGGACTGGTGGTT---CTGATCCTGATCGCTCTGATGGCTAT 173
BSNT_01916___ 174 TTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTA- 222
.||.||||||.||||||||||.|.|.|.|||..|...||..|| |||
BL03325___opp 174 CTTCGCGCCGGTGTTCTCAAGCTTTCAATATGAAGAAACAGAT---TTAA 220
BSNT_01916___ 223 --AATGCGGATAAGCCCCCTTCAAAA-----GATCACTGGTTCGGAACAG 265
||||||.|..||||.|| || ||.||||||||.|||||||
BL03325___opp 221 CGAATGCGAACCAGCCGCC-----AAGCGGTGAGCACTGGTTTGGAACAG 265
BSNT_01916___ 266 ATGATCTTGGGCGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATC 315
||||.|||||..|||||.|.|||||||||||||||||.||.||.||.|||
BL03325___opp 266 ATGACCTTGGAAGGGACGTATTCGTCCGTACATGGGTCGGCGCCCGCATC 315
BSNT_01916___ 316 T------CAATCTTTATCGGTGTTGCAGCTGCTGTTCTTGA--TTTGCTG 357
| |||||....|||.||.||| ||||.|| || ||| ||
BL03325___opp 316 TCGCTGACAATCGGACTCGCTGCTGC----GCTGATC--GACGTTT--TG 357
BSNT_01916___ 358 ATCGGCGTCATTTGGGGGAGC-ATTTCAGGCTTCCGCGGAGGCAGAACGG 406
|||||.||.||.| ||||.|| |||||.|||.||.|.||.||..|.||||
BL03325___opp 358 ATCGGTGTGATAT-GGGGTGCGATTTCCGGCATCAGAGGCGGACGTACGG 406
BSNT_01916___ 407 ACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTA 456
|.|||||.||||||.|.||.||.|||||..|.|||||..|||||||.|||
BL03325___opp 407 ATGAAATTATGATGAGAATAGCAGATATTTTATGGGCGATTCCTTCTTTA 456
BSNT_01916___ 457 TTAATGGTTATCTTACTGATGGTTGTTCTTCCGAAAGGTCTATTTACGAT 506
||||||...|||.|.|||.|.||||||.|....|||||.||..|.|||||
BL03325___opp 457 TTAATGACCATCCTGCTGCTCGTTGTTATGGGAAAAGGCCTGATCACGAT 506
BSNT_01916___ 507 TATTATTGCCATGACGATTACGGGCTGGATTAATATGGCCAGAATCGTGC 556
.||..|.||.|||...||||||||||||||.||.|||||.||||||||.|
BL03325___opp 507 GATCGTGGCGATGGTTATTACGGGCTGGATCAACATGGCGAGAATCGTCC 556
BSNT_01916___ 557 GCGGACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAG 606
|.||.|||||.||.|||||.||.||||||||||..||.||.||.||| ||
BL03325___opp 557 GGGGCCAAGTACTCCAGCTTAAAAATCAGGAGTTCGTACTCGCCTCA-AG 605
BSNT_01916___ 607 -ACACTGGGTGC-AAAAACATCCCGTCTTCTGTTTAAACATATCGTGCCA 654
|||.||||.|| |||||| ||.||..||.|....||.||..|..||||.
BL03325___opp 606 AACATTGGGAGCGAAAAAC-TCGCGCATTATCAGAAAGCACCTGCTGCCC 654
BSNT_01916___ 655 AACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGC 704
|||...|||.|..|.||.||||||||.||||||.|.||.||||||||.||
BL03325___opp 655 AACATCATGAGCCCGATCTTGGTCACCATGACATTAACCGTTCCTACGGC 704
BSNT_01916___ 705 GATTTT-TACAGAAGCCTTTTTAAGCTATTTGGGACTCGGTGTTCCGGCT 753
.||||| || .||.||.|||||||||||..|.||.|||||.||||||...
BL03325___opp 705 TATTTTCTA-TGAGGCGTTTTTAAGCTACCTCGGCCTCGGGGTTCCGCAG 753
BSNT_01916___ 754 CCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATTGAC 803
|||||.||||||||||||||||||||..|.|||||..|.|..|.||||..
BL03325___opp 754 CCGCTTGCAAGCTGGGGAACGATGGCAACAGACGGTGTTCAGGGATTGGA 803
BSNT_01916___ 804 CTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAA 853
.||.||.||.|||||..|.||||||||.||....||||||||..|.||.|
BL03325___opp 804 ATACTACCCTTGGCGCCTGTTCTTCCCGGCTACTTTTATCTGTCTGACCA 853
BSNT_01916___ 854 TGTTTGGCTTTAACGTTGTCGGCGACGGATTAAGAGACGCATTGGATCCT 903
||||||..||.||||||.|||||||||||.|..|.|||||.||.|||||.
BL03325___opp 854 TGTTTGCATTCAACGTTATCGGCGACGGACTGCGCGACGCTTTAGATCCG 903
BSNT_01916___ 904 AAGTTACGTAAATAA 918
|||.|.|||||||||
BL03325___opp 904 AAGCTGCGTAAATAA 918
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