Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01914 and BL03323
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:26
# Commandline: needle
# -asequence dna-align/BSNT_01914___oppA.1.5803.seq
# -bsequence dna-align/BL03323___oppA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01914___oppA-BL03323___oppA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01914___oppA-BL03323___oppA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01914___oppA
# 2: BL03323___oppA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1693
# Identity: 1194/1693 (70.5%)
# Similarity: 1194/1693 (70.5%)
# Gaps: 122/1693 ( 7.2%)
# Score: 3973.5
#
#
#=======================================
BSNT_01914___ 1 ATGAAAAAACGTTGGTCGATTGTCACGTTGATGCTCATTTTCACTCTCGT 50
.||||.||.||||.|||..||.|||..||.||||||||||||||.|||||
BL03323___opp 1 TTGAAGAAGCGTTTGTCATTTATCAGTTTAATGCTCATTTTCACACTCGT 50
BSNT_01914___ 51 GCTGAGCGCGTGCGGCTTTGGCGGCAGCGGATCAA---ACGGTGA---GG 94
.||.|||||.|||||||| |||.|||| .|||||| .|
BL03323___opp 51 CCTCAGCGCCTGCGGCTT---------CGGCTCAAGCTCCGGTGACGGCG 91
BSNT_01914___ 95 GGAAAAAGGACAGTAAA-GGAAAGACGACACTTAACATTAATATTAAAAC 143
|.|||||.|||||.||| |||||||| |||.|.||..|.||.||||||||
BL03323___opp 92 GTAAAAAAGACAGCAAAGGGAAAGAC-ACATTAAATGTCAACATTAAAAC 140
BSNT_01914___ 144 TGAGCCGTTTTCCTTACATCCGGGATTGGCAAATGATTCAGTATCAGGCG 193
.||.||||||||..|||||||||||.|.|||||.|||| ||
BL03323___opp 141 AGAACCGTTTTCACTACATCCGGGACTCGCAAACGATT----------CG 180
BSNT_01914___ 194 GTGTC----------ATCCGTCAGACTTTTGAAGGATTGAC-ACGTATCA 232
||||| .|.||||||||||||||||||||||| || .|||.
BL03323___opp 181 GTGTCTGCAAACGTGCTTCGTCAGACTTTTGAAGGATTGACGAC-AATCG 229
BSNT_01914___ 233 ATGCAGATGGTGAGCC---TGAAGAAGGCATGGCTTCTAAAATTGAAACG 279
.|..||||||..|||| ||||| .|||| ||....|||||.|||...
BL03323___opp 230 GTAAAGATGGAAAGCCGGTTGAAG-CGGCA--GCCGAAAAAATCGAAGTC 276
BSNT_01914___ 280 AGCAAGGACGGAAAGACATATACATTTACCATTCGTGATGGTGTGAAATG 329
|||.|.|||..|||.|||||.|||||.||..|.||.|| .|.||||||
BL03323___opp 277 AGCGACGACCAAAAAACATACACATTCACGCTCCGCGA---CGCGAAATG 323
BSNT_01914___ 330 GTCTAATGGGGACCCTGTAACAGCACAAGATTTTGAATATGCTTGGAAAT 379
|||.|||||.||.||||||||||||.|.|||||||||||.||.|||||||
BL03323___opp 324 GTCAAATGGAGATCCTGTAACAGCAGAGGATTTTGAATACGCATGGAAAT 373
BSNT_01914___ 380 GGGCGCTTGATCCTAATAACGAATCGCAATACGCTTACCAGCTCTACTAC 429
|||||||.||.|||||.||||||||||||||.||.||.|||||.||||||
BL03323___opp 374 GGGCGCTCGACCCTAAAAACGAATCGCAATATGCGTATCAGCTTTACTAC 423
BSNT_01914___ 430 ATAAAAGGTGCTGAAGCGGCGAATACCGGCAAAGGCAGCCTAGACGATGT 479
.|||||||.|..|||||.|||||.|||||||||||.|...|.||.|||||
BL03323___opp 424 TTAAAAGGCGGAGAAGCAGCGAACACCGGCAAAGGGAAAATTGAAGATGT 473
BSNT_01914___ 480 -GGCAGTAAAAGCTGTGAATGACAAAACGCTGAAGGTTGA-ATTAAATAA 527
||| ||.||||||||.|||||.||.||..|.||.||.|| .||.|| ||
BL03323___opp 474 CGGC-GTTAAAGCTGTTAATGATAAGACTTTAAAAGTCGAGCTTGAA-AA 521
BSNT_01914___ 528 CCCGACTCCATATTTCACTGAATTAACTGCGTTCTATACGTATATGCCGA 577
.|||||.||.|||||.||||||.|.||.||.|||||.||.||||||||..
BL03323___opp 522 ACCGACACCGTATTTTACTGAACTGACAGCATTCTACACATATATGCCAG 571
BSNT_01914___ 578 TCAATAAGAAAATTGCAGAGAAAAATAAAAAGTGGAATACAAATGCCGGA 627
|||||||.||..|.||||||||.|||...||.|||.|.||||| ||.|
BL03323___opp 572 TCAATAAAAAGGTAGCAGAGAAGAATGCGAAATGGTACACAAA---CGCA 618
BSNT_01914___ 628 GATG---ATTATGTATCAAACGGGCCGTTCAAAATGACGGCATGGAAACA 674
|||| |.||.|||||.|||||.||.|||||||||.||..||||||.||
BL03323___opp 619 GATGAGAACTACGTATCTAACGGACCTTTCAAAATGGCGAAATGGAAGCA 668
BSNT_01914___ 675 CAGCGGCTCTAT--TACTCTCGAAAAAAATGACCAGTATTGGGATAAAGA 722
||||||....|| || ||.||.|||||.||||||||.|||||||||||
BL03323___opp 669 CAGCGGAAACATCGTA--CTGGAGAAAAACGACCAGTACTGGGATAAAGA 716
BSNT_01914___ 723 CAAAGTCAAACTGAAGAAAATCGATATGGTTATGATCAACAAT---AACA 769
|...||.||.||||||||||||.||||||..|||.|||||.|| ||||
BL03323___opp 717 CGCTGTTAAGCTGAAGAAAATCAATATGGCGATGGTCAACGATCCGAACA 766
BSNT_01914___ 770 AT--ACGGAAC---TA-AAAAAATTCCAAGCTGGCGAACTTGA--TTG-- 809
.| .|.|||| || |||||| |||||.||.|| |||
BL03323___opp 767 CTGGTCTGAACATGTACAAAAAA---------GGCGAGCTAGACTTTGTA 807
BSNT_01914___ 810 GGCCGGTATGCCGCTCGGACAGCTTCCGACAGAATCCCTGCCGACCCTGA 859
||.| .||||||.|..|||.||.|.||.||..|..|.||.|.|||||
BL03323___opp 808 GGAC----AGCCGCTTGACCAGATTTCAACGGATGCGATTCCAAGCCTGA 853
BSNT_01914___ 860 AAAAAGACGGTTCTTTACATGTTGAGCCGATTGCAGGAGTGTATTGGTAC 909
|||||||.|| .||..||| ||||.|||.|.|||...||.||...||||
BL03323___opp 854 AAAAAGAAGG-CCTGAACA--TTGATCCGTTCGCATCGGTTTACCTGTAC 900
BSNT_01914___ 910 AAATTCAACACTGAAGCTAAGCCATTAGACAACGTCAATATCCGTAAAGC 959
|||||||||||||||||....||..|..||||.|||||.||||||||.||
BL03323___opp 901 AAATTCAACACTGAAGCGGCTCCGCTGAACAATGTCAACATCCGTAAGGC 950
BSNT_01914___ 960 TTTAACATATTCGCTTGACCGTCAGTCGATTGTTAAAAACGTTACGCAAG 1009
..|.|||||..||.|..||||..|..||||.||.||||||.|.|||||||
BL03323___opp 951 GCTGACATACGCGATCAACCGCGAAGCGATCGTCAAAAACATCACGCAAG 1000
BSNT_01914___ 1010 GAGAGCAAATCCCGGCAATGGCTGCAGTGCCGCCTACAATGAAGGGATTT 1059
..||.||..|.||.||.||||....|||||||||..|..|..|.||.|||
BL03323___opp 1001 CGGAACAGCTGCCTGCGATGGGATTAGTGCCGCCGGCGGTCCACGGCTTT 1050
BSNT_01914___ 1060 GAGGAT--AACAAGGAAGGATACTTCAAAGACAATGATGTCAAAACAGCA 1107
|| || |||| ||||.||.|||||||||.||||||||.|.|..||.
BL03323___opp 1051 GA--ATCCAACA---AAGGCTATTTCAAAGACCATGATGTCGATAAGGCG 1095
BSNT_01914___ 1108 AAAGAATACCTTGATAAAGGCCTAAAAGAAATGGGCTTAAGCAAGGCATC 1157
||||||.||.|.||.||||||.|.|||||..|.||.||.|..||.||.||
BL03323___opp 1096 AAAGAACACTTGGAAAAAGGCTTGAAAGAGCTCGGTTTGAAAAAAGCGTC 1145
BSNT_01914___ 1158 TGATTTGCCAAAAATCAAATTGTCTTACAACACTGATGACGCACACGCGA 1207
.||..|.||.|||||||...|.||.||||||||.|||||.||.|||...|
BL03323___opp 1146 AGACCTTCCGAAAATCACGCTTTCCTACAACACGGATGAAGCGCACCAAA 1195
BSNT_01914___ 1208 AAATCGCTCAAGCAGTACAAGAAATGTGGAAGAAAAATTTAGGCGTTGAT 1257
|||||||||||||.||.||.|||||||||||.||..|..|.|||||.|||
BL03323___opp 1196 AAATCGCTCAAGCCGTTCAGGAAATGTGGAACAAGGAACTGGGCGTAGAT 1245
BSNT_01914___ 1258 GTTGAGCTTGATAACTCAGAGTGGAATGTCTATATTGATAAGCTTCACAG 1307
||.||..|.|..||...|||.|||||.||.||.||.||||||||.|| .|
BL03323___opp 1246 GTGGAATTAGGCAATGAAGAATGGAACGTTTACATCGATAAGCTCCA-TG 1294
BSNT_01914___ 1308 CC--AAGATTATCAAATCGGCCGTATGGGCTGGCTCGGCGACTTCAATGA 1355
|| || |.|||||||||||||||.|.||||||..||.||||||.||.||
BL03323___opp 1295 CCGGAA-ACTATCAAATCGGCCGTTTAGGCTGGACCGCCGACTTTAACGA 1343
BSNT_01914___ 1356 TCCTATCAACTTCCTTGAATTGTTCCGTGACAAAAACGGAGGAAATAACG 1405
....||.||||||||||||...|.|||.||||||.|.||.|||||.||.|
BL03323___opp 1344 CGGGATGAACTTCCTTGAAACATACCGCGACAAAGAAGGCGGAAACAATG 1393
BSNT_01914___ 1406 ATACAGGCTGGGAAAATCC--AGAATTCAAAAAGCTTCTGAATCAGTCAC 1453
||||...|||||||||..| ||.|| |||.||||.||||||.|..||.
BL03323___opp 1394 ATACGAACTGGGAAAACGCGAAGTAT--AAAGAGCTGCTGAATAAAGCAT 1441
BSNT_01914___ 1454 AAACTGAAACAGATAAAACAAAACATGCA--GAGCTGCTGAAAAAAGCAG 1501
.||..|||||.|||..|.|.|||| ||| ||||||.|||||.||||.|
BL03323___opp 1442 CAAGAGAAACTGATTCAGCGAAAC--GCATCGAGCTGATGAAAGAAGCGG 1489
BSNT_01914___ 1502 AAGGTATTTTCATTGATGAAATGCCGGTTGCCCCAATCTATTTC--CATA 1549
||.|.||..||||.|||||..|||||||.||.||.|||||.||| ||.|
BL03323___opp 1490 AAAGCATCATCATGGATGAGCTGCCGGTCGCACCGATCTACTTCTACACA 1539
BSNT_01914___ 1550 CTG----ATACTTGGGTACAGGATGAAAACCTAAAAGGTGTTATCATGCC 1595
.|| || ||| ||.|||||||.|.||||||...||.|..||.|
BL03323___opp 1540 ATGCCGTAT-CTT-----CATGATGAAAGCTTAAAAGACTTTGTTCTGAC 1583
BSNT_01914___ 1596 AGGTACTGGTGAGGTTTATTTCAGAAACGCATATTTTAAATAA 1638
.|||||.||||||.|.|||||||.||.|||..|||||.|||||
BL03323___opp 1584 CGGTACAGGTGAGATCTATTTCAAAACCGCGCATTTTGAATAA 1626
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