Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01905 and BL03318
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:26
# Commandline: needle
# -asequence dna-align/BSNT_01905___appA.1.5803.seq
# -bsequence dna-align/BL03318___appA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01905___appA-BL03318___appA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01905___appA-BL03318___appA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01905___appA
# 2: BL03318___appA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1732
# Identity: 1163/1732 (67.1%)
# Similarity: 1163/1732 (67.1%)
# Gaps: 188/1732 (10.9%)
# Score: 3674.5
#
#
#=======================================
BSNT_01905___ 1 ATGAAAAGACGGAAAACCGCACTGAT----GATGCTAAGTGTATTGATGG 46
|||||.|.|||.|||||.| ||| .||..||||..|..||.||.
BL03318___app 1 ATGAATAAACGCAAAACAG----GATTTTCAATTTTAAGCTTGCTGCTGA 46
BSNT_01905___ 47 TTCTGGCCATCTTTTTATCAGCCTGC-------------TC----GGGAT 79
|..|..|.||.|||.||.|.|||||| || |||||
BL03318___app 47 TCTTATCGATTTTTCTAACGGCCTGCAACAGCGGCGAAGTCGGAGGGGAT 96
BSNT_01905___ 80 CAAAATCAAGCAACAGCAGCGCGAAAAAATCAGCAGGCAAACCGCAGCAA 129
.||||..||| || |||||.|..||.||.||||||||.
BL03318___app 97 GAAAAAGAAG----------GC----AAATCTGACGGGAAGCCGCAGCAG 132
BSNT_01905___ 130 GGCGGGGATTTGGTTGTTGGTTCAATCGGAGAACCCACACTTTTTAACTC 179
|||||.|||.||.|||.|||.||.|..||.|||||.||.||.|||||.||
BL03318___app 133 GGCGGAGATCTGATTGCTGGATCCACAGGTGAACCGACGCTGTTTAATTC 182
BSNT_01905___ 180 TCTGTATTCTACCGATGAC-GCAAGTACGGATATTGAAAATATGCTGTAC 228
.||||||||.||.||| || ||||||.|.||||||||||...||.|.|||
BL03318___app 183 ACTGTATTCAACTGAT-ACAGCAAGTTCAGATATTGAAAGACTGATCTAC 231
BSNT_01905___ 229 AGC---TTTTTA-ACGAAAACGGATGAAAAACT--AAATGTGAAATTGTC 272
|.| ||.||| |||..| ||||.||||| ||.||..||| |
BL03318___app 232 AACACTTTGTTAGACGTTA----ATGAGAAACTTGAAGTGGAAAA----C 273
BSNT_01905___ 273 --ACTCGCTGA--AAGCATTAAA-GAATTAGACGGCGGCCTTGCATATGA 317
||||||||| ||| |||| ||||..||.|..||..|..|||..||
BL03318___app 274 CAACTCGCTGATGAAG---TAAAGGAATCGGAGGATGGGTTAACATTCGA 320
BSNT_01905___ 318 TGTGAAAATTAAAAAAGGCGTTAAGTTTCATGACGGAAAAGAACTGACTG 367
||||||..|.|||.||||.||.||||||||.|||||..|||||.||||.|
BL03318___app 321 TGTGAAGCTAAAAGAAGGTGTCAAGTTTCACGACGGTGAAGAAATGACAG 370
BSNT_01905___ 368 CAGACGACGTCGTATTTACGTACAGTGTCCCTTTAAGCAAAGATTACAAG 417
|.|||||.|||||.|||||.|||||..|.||..|.||..|.||.|||...
BL03318___app 371 CCGACGATGTCGTTTTTACTTACAGCATTCCGATGAGTGATGAATACGTT 420
BSNT_01905___ 418 GGAGAACGCGGTTCAACATATGAAATGCTGAAATCCGTAGAAAAAAAAGG 467
|||||||||||.||||..|.|.|||||.|..|.||.||....||||||||
BL03318___app 421 GGAGAACGCGGCTCAAACTTTAAAATGATAGAGTCTGTCACGAAAAAAGG 470
BSNT_01905___ 468 CGATTACGAAGTCTTGTTTAAGCTGAAATATAAAGA--------CGGTAA 509
..|.||.|||||...|||| |||| |||||| |.|| |
BL03318___app 471 TAAATATGAAGTGCAGTTT------AAAT-TAAAGAAGCAGGATCCGT-A 512
BSNT_01905___ 510 TTTCTACAACAATGCGTTAGAC-AGCACA-----GCTATTCTGCCGAAAC 553
|||.||||| .||||.|| .|| || |.|||||||||.||.|
BL03318___app 513 TTTTTACAA-----TGTTACACTTGC-CAGTTACGGTATTCTGCCTAAGC 556
BSNT_01905___ 554 ATATTCTCGGTA----ATGTTCCGATTGCTG--ATTTAGAAGAAAATGAG 597
|.||| .|| ||||.||.|| |.| |..|.|..|||.|.||.
BL03318___app 557 ACATT----TTAAAAGATGTCCCAAT--CAGCAAACTCGGTGAACACGAA 600
BSNT_01905___ 598 TTTAACAGAAAGAAACCAATCGGTTCAGGACCATTTAAGTTTAAGGAATG 647
||.||..|||||||.||.||.||..|||||||.|||||.|||||.|||||
BL03318___app 601 TTCAATCGAAAGAATCCGATTGGAACAGGACCGTTTAAATTTAAAGAATG 650
BSNT_01905___ 648 GAAGCAGGGCCAATATATTAAGCTCGAAGCGAATGATGATTACTTTGAAG 697
|||..|.||.||||||.|.|||.|.||.||...|||||||||.|.||..|
BL03318___app 651 GAAAGAAGGACAATATGTAAAGGTTGAGGCTTTTGATGATTATTATGCCG 700
BSNT_01905___ 698 GAAGACCGTATTTAGATACTGTGACGTATAAAGTCATTCCTGACGCAAAT 747
|..|.||..||||||||.|..|.|||||||||.|.|||||.||..|||||
BL03318___app 701 GGCGTCCTCATTTAGATTCGATCACGTATAAAATTATTCCGGATTCAAAT 750
BSNT_01905___ 748 GCTGCCGTTG-CTCAGCTGCAGGCAGGCGAT----ATTAATT--TCTTTA 790
||.| ||.|| |.||||||||.||.||.||| ||||.|| ||.|||
BL03318___app 751 GCAG-CGCTGTCACAGCTGCAAGCTGGAGATGTCGATTACTTGGTCGTTA 799
BSNT_01905___ 791 ATGTGCCCGCCA----CTGACTACAAAACGGCTGAAAAATTCAACAACCT 836
|.||| |.|||||.||||||||.||.|||||.|||||..|
BL03318___app 800 -------CACCAGGACCAGACTATAAAACGGCCGAGAAATTTAACAATGT 842
BSNT_01905___ 837 AAAAATCGTTACTGATTTGGCATTAAGTTATGTGTACATCGGGTGGAATG 886
.||.||.|..||.|||||.|..||.|.||||..|||.|||||.|||||.|
BL03318___app 843 GAAGATGGAAACCGATTTAGGTTTGAATTATACGTATATCGGCTGGAACG 892
BSNT_01905___ 887 AAAAAAATGAATTATTCAAGGATAAAAAGGTTCGTCAAGCGCTGACAACC 936
|||.||||||..|.||.|||||||||||||||||.||||||||||||...
BL03318___app 893 AAAGAAATGAGCTGTTTAAGGATAAAAAGGTTCGCCAAGCGCTGACACAT 942
BSNT_01905___ 937 GCTCTTGACCGCGAGTCAATCGTCAGCCAAGTATTAGATGGAGACGGCGA 986
||.|||||||||.||.|..||||...||||||..||||||||||.||.||
BL03318___app 943 GCGCTTGACCGCCAGGCGCTCGTTGACCAAGTTCTAGATGGAGATGGGGA 992
BSNT_01905___ 987 GGTAGCTTACATTCCGGAAAGCCCTTTATCTTGGAACTATCC------TA 1030
..|.||..||||.|||||||||||..|.||.||||||||.|| .|
BL03318___app 993 AATCGCGAACATCCCGGAAAGCCCGCTTTCATGGAACTACCCGGATAACA 1042
BSNT_01905___ 1031 AAGATA----TAGATGTTCCGAAA--TTTGAGTAC-AACGAGAAAAAAGC 1073
|||||| || ||| |||||.||| |.|.|| |.|||||
BL03318___app 1043 AAGATAAGTTTA---------AAACGTTTGAATACGATCCAG-AGAAAGC 1082
BSNT_01905___ 1074 GAAACAGATGCTTGCAGAAGCCGGCTGGAAAGATACGAACGGTGACGGCA 1123
.|||.|..||||...||||||.||.||||.|||..|..|.|||||.||.|
BL03318___app 1083 AAAAAAACTGCTCAAAGAAGCAGGATGGACAGACTCAGATGGTGATGGGA 1132
BSNT_01905___ 1124 TTCTGGATAAAGACGGAAAGAAATTCTCGT---TTACCCTTAAAACGAAC 1170
||.|.|||||.|||||.||.||.||.||.| ||| |||||||||||
BL03318___app 1133 TTTTAGATAAGGACGGCAAAAAGTTTTCTTTCGTTA---TTAAAACGAAC 1179
BSNT_01905___ 1171 CAAGGAAACAAAGTCCGTGAAGACATCGCTGTCGTCGTTCAGGAACAGCT 1220
||||||||||||...||.||||||.||||.||.||.||||||.|.||..|
BL03318___app 1180 CAAGGAAACAAAACACGGGAAGACCTCGCGGTTGTTGTTCAGCAGCAATT 1229
BSNT_01905___ 1221 GAAAAAAATCGGCATTGAAGTGAAAACC-CAGATCGTTGAATGGAGCGCT 1269
.|||.||||.||.|||.||| .|||||| |||||.|||||||||||.|||
BL03318___app 1230 AAAAGAAATTGGGATTCAAG-CAAAACCGCAGATTGTTGAATGGAGTGCT 1278
BSNT_01905___ 1270 CTCGTTGAACAAATGAATCCTCCGAATTGGGATTTTGATGCAATGGTCAT 1319
.|..|||||||||||||.||.||||||||||||||||||||.|||.||||
BL03318___app 1279 TTAATTGAACAAATGAACCCGCCGAATTGGGATTTTGATGCGATGATCAT 1328
BSNT_01905___ 1320 GAGATGGAGTTTATCCACATTCCCAGATCAATATG----ATATCTTCCAT 1365
|.|.|||||..|..|.||.|||||.||||| | |.||.||||||
BL03318___app 1329 GGGCTGGAGCCTTGCTACGTTCCCTGATCA----GAGCAACATTTTCCAT 1374
BSNT_01905___ 1366 TC-----AAGCCAGATTAAAAAGGGTTTGAACTACGTTTGGTATAAAAAT 1410
|| |||| |.||||.||..|.|||||.|||||||||.|||||
BL03318___app 1375 TCGAAAGAAGC-----TGAAAAAGGACTAAACTATGTTTGGTATCAAAAT 1419
BSNT_01905___ 1411 GCCGAAGC-GGATAAACTCATGAAAGATGCAAAATCAAT------CAGTG 1453
| ..|||| .||||||||..||.|.||.||.|||.|..| |.|||
BL03318___app 1420 G-AAAAGCTTGATAAACTGCTGGATGAAGCTAAAACGTTGAAGGACCGTG 1468
BSNT_01905___ 1454 ATAGAAAGCAGTATTCAAAAGAATATGAGCAAATCTATCAAAAAATTGCG 1503
| |||| |||..|||.|..|||||..|.||.||..|||...|.|||
BL03318___app 1469 A-AGAA-----TATAAAAAGGCGTATGAAGATATTTACGAAATTCTGGCG 1512
BSNT_01905___ 1504 GAAGATCAGCCCTATACGTTCTTGTATTATCCTAACAACCATATGGCAAT 1553
|||||||||||.|||||.||||||||||||.|.||..||||||..||.||
BL03318___app 1513 GAAGATCAGCCGTATACATTCTTGTATTATACGAATTACCATAGAGCGAT 1562
BSNT_01905___ 1554 GCCGGAAAATCTTGAAGGATACAAATATCATCCGAAACGTGATTTGTATA 1603
|||..|||||.|..||||.|||..||..|||||||||...|||||.||||
BL03318___app 1563 GCCTAAAAATATGAAAGGCTACGTATTCCATCCGAAAGAAGATTTCTATA 1612
BSNT_01905___ 1604 ATATTGAAAAATGGTGGCT---TGAAAAATAA 1632
|....|||.|.|||||||| |.||||||||
BL03318___app 1613 AAGCCGAAGACTGGTGGCTGGATCAAAAATAA 1644
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