Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01900 and BL03315

See Amino acid alignment / Visit BSNT_01900 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:25
# Commandline: needle
#    -asequence dna-align/BSNT_01900___yjaZ.1.5803.seq
#    -bsequence dna-align/BL03315___yjaZ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01900___yjaZ-BL03315___yjaZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01900___yjaZ-BL03315___yjaZ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01900___yjaZ
# 2: BL03315___yjaZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 872
# Identity:     525/872 (60.2%)
# Similarity:   525/872 (60.2%)
# Gaps:         169/872 (19.4%)
# Score: 1363.0
# 
#
#=======================================

BSNT_01900___      1 ATGAGTGTAGAACAA--ACATATAGCTGGCTCAGGA--AGGCCGGTTCAA     46
                     ||||||.|||  |||  ||.|||...|||||  .||  ||||   |||  
BL03315___yja      1 ATGAGTATAG--CAAGCACGTATGAATGGCT--TGAACAGGC---TTC--     41

BSNT_01900___     47 TAGAT--------GATTTGGCGCACTACATTATCCCGC--TTTTTTCAGG     86
                        ||        ||.|||.|...||   ||.|||.||  |.||||.|.|
BL03315___yja     42 ---ATCCGTGCGGGAATTGCCAAGCT---TTCTCCTGCCGTATTTTAAAG     85

BSNT_01900___     87 TGCGGAGAAAAAGAACTGGAAG----GGC-ATTCTGGGACACCTTCAGCA    131
                      |||....|||||   .|||.|    ||| |||.|..|.|||||.||| |
BL03315___yja     86 -GCGCTTCAAAAG---CGGATGCGGCGGCGATTGTCAGCCACCTGCAG-A    130

BSNT_01900___    132 T-CATGGGATGT----TTAAAAACATAAAAGAGGGTATTCAGACGG----    172
                     | ||.||..|||    ||               .||...|.|||||    
BL03315___yja    131 TCCACGGCTTGTTCCGTT---------------CGTGGACGGACGGCGAA    165

BSNT_01900___    173 -TTTCCA------AGCTGAAGGAAAAAG--GTTTTTACGGACATATCCAA    213
                      .|.|.|      ||||.||||||||.|  ||.|||..|  |||.||..|
BL03315___yja    166 CGTACGATGAAGCAGCTTAAGGAAAACGGCGTATTTCAG--CATGTCAGA    213

BSNT_01900___    214 AAGGAAGAACAGTACCTCAAAAACAAATGGCAAGGTCCTGATGTACCAAT    263
                     ..||||||||||...|||...||.|.||||.|.||.||.|||||.||.||
BL03315___yja    214 CGGGAAGAACAGCTGCTCTGCAAAAGATGGAACGGGCCGGATGTTCCGAT    263

BSNT_01900___    264 TGTTACGCTGCCGGTTGATGAACGAAACAGGAGAATCCGTTTAGAGTTCG    313
                     |.|.|..||||||||.||||||.|||||.|.|.||||||..|.||.||||
BL03315___yja    264 TTTCATCCTGCCGGTCGATGAAAGAAACCGCAAAATCCGCGTCGAATTCG    313

BSNT_01900___    314 GATCAAAATCAGGACTCGCCTTTCA-AGACAAAATGTTCCTTTTTCTTTC    362
                     |.||.||||||||.|||| |.|||| .||||||.|.||..|.|||.|.||
BL03315___yja    314 GCTCGAAATCAGGCCTCG-CGTTCAGCGACAAATTATTTTTGTTTTTATC    362

BSNT_01900___    363 GTCAGAT-----------TTAGATTTTGGGTCGGTATCTGCCCTTATGAC    401
                     |.|.|||           ||..|||           |||||..|.|||||
BL03315___yja    363 GGCCGATCTTCCCCGGTCTTCAATT-----------TCTGCGATCATGAC    401

BSNT_01900___    402 GCATGAGTATCATCACGTTTGCCGGTTAGGTCATCTGACAAAAGAGG--A    449
                     .||.||.|||.||||||||||||||||||...||.||.|.|||||.|  |
BL03315___yja    402 ACACGAATATAATCACGTTTGCCGGTTAGAAAATATGCCGAAAGAAGAAA    451

BSNT_01900___    450 AAAGGATGTCACATTACTTGATACAATCATCATGGAAGGGCTGGCGGAAT    499
                     |||.||||  ||..|.||||||||||||||..|.|||||.||.||.||||
BL03315___yja    452 AAAAGATG--ACGCTGCTTGATACAATCATTCTCGAAGGCCTTGCAGAAT    499

BSNT_01900___    500 ATGCTGTTTATGAGAGGTTCGGCCGAAGCC-AAACGGCTGAGTGGACGAC    548
                     ||||.||||..||..||.| ||..|||||| ||||.||.|..||||||  
BL03315___yja    500 ATGCCGTTTTCGAACGGCT-GGGAGAAGCCGAAACAGCCGCATGGACG--    546

BSNT_01900___    549 TTGGTA-TACACCG--GAGCAGCTTCAGGC-TTTATATGA---------A    585
                      |..|| |||.|||  .||||||||| |.| |||..|.||         |
BL03315___yja    547 -TCATATTACTCCGAAAAGCAGCTTC-GTCATTTCCAGGACCGGTTCGTA    594

BSNT_01900___    586 AAAAAGATTGCGCCCCATCGGGATATCAAACGG----GATAATCGAT---    628
                     ||         |||.|      ||.||.|.|.|    ||.|  ||||   
BL03315___yja    595 AA---------GCCTC------ATTTCGACCTGCGCCGACA--CGATGGC    627

BSNT_01900___    629 ----TATTTCCCCAA-CTGTTATTCGGCAAAGGATATCAGCCAAAAATGC    673
                         || |||.|||| .|.|||||.||.||||||.||.|.||..|.||||
BL03315___yja    628 CGGCTA-TTCTCCAATATTTTATTTGGAAAAGGACATTACCCTGACATGC    676

BSNT_01900___    674 TTGGATACGCAGTTGGATTCAATATTGTAAAAAAATATTTAACCGCCAGC    723
                     |.|||||.||.||.||.|.||.||||||.||||||||||||.|.||..|.
BL03315___yja    677 TCGGATATGCTGTCGGTTACAGTATTGTGAAAAAATATTTATCGGCTCGA    726

BSNT_01900___    724 AA---GGCAAGCGCCGCAGACGGGCTGT-----CCATTCCTGCTGAAACC    765
                     ||   |  ||| |..||.||     |||     ||.||||..|.|||..|
BL03315___yja    727 AAATTG--AAG-GTTGCCGA-----TGTTTTAGCCTTTCCGTCAGAAGAC    768

BSNT_01900___    766 TTTTTGGATGCAAT-GCTTTAA    786
                     |||.| .|.||.|| |||||||
BL03315___yja    769 TTTAT-AAAGCTATCGCTTTAA    789


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01900 and BL03315

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
