Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03243 and BL03304
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:54
# Commandline: needle
# -asequence dna-align/BSNT_03243___ypmQ.1.5803.seq
# -bsequence dna-align/BL03304___ypmQ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03243___ypmQ-BL03304___ypmQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03243___ypmQ-BL03304___ypmQ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03243___ypmQ
# 2: BL03304___ypmQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 652
# Identity: 419/652 (64.3%)
# Similarity: 419/652 (64.3%)
# Gaps: 101/652 (15.5%)
# Score: 1343.0
#
#
#=======================================
BSNT_03243___ 1 ATGAAGGTTATCAAGGGGTTAACGGCTGGGCTGATTTTTC---------- 40
.|||| ||..|.|| |.||| |||||.|
BL03304___ypm 1 TTGAA-------AAACGTTT------TTGGC--ATTTTCCTTGCAGGTAT 35
BSNT_03243___ 41 --------TGTTT-TTGTGTGCATGCGGAGGAC-AGC-AGATTAAAAATC 79
||||| ||..|| |.|||||| || ||| |||||.|.||||
BL03304___ypm 36 TCTCACAGTGTTTCTTTCGT-CCTGCGGA--ACTAGCAAGATTGATAATC 82
BSNT_03243___ 80 CGCTCAATTACGAGGTGGAGCCTTTTACATTTCAAAACCAAGACGGCAAG 129
|..|.||.||.||.||..||.|||||.|.||||||||.||||||||.||
BL03304___ypm 83 CTTTGAACTATGATGTACAGTCTTTTTCTTTTCAAAATCAAGACGGGAA- 131
BSNT_03243___ 130 AACGTT---TCTTTAGAGAGTTTAAAAGGAGAAGTATGGCTGGCGGATTT 176
|.||.| |||| ||.|||||||||||..|.||.|||.||||.||.||
BL03304___ypm 132 AGCGGTGACTCTT--GAAAGTTTAAAAGGCCAGGTGTGGGTGGCTGACTT 179
BSNT_03243___ 177 TATTTTTACCAATTGTGAAACTATATGTCCGCCAATGACCGCTCATATGA 226
|||.|||||.||.||||||||.||.||||||||.|||||..|.||||||.
BL03304___ypm 180 TATATTTACGAACTGTGAAACGATCTGTCCGCCGATGACTTCACATATGG 229
BSNT_03243___ 227 CCGATCTGCAAAAAAAACTGAAAGCCGAAAATATAGATGTCCGCATCATA 276
|.||.|||||||||.||.||.|||..|||||..|..|.|.|||||||.|.
BL03304___ypm 230 CTGAACTGCAAAAACAAATGGAAGAGGAAAACCTGCAGGCCCGCATCGTC 279
BSNT_03243___ 277 TCATTTAGTGTTGATCCAGAAAACGATAAGCC-GAAACAGCTGAAGAAAT 325
|||||.||.||||||||.|||||.||||.||| |||| |..|||||||||
BL03304___ypm 280 TCATTCAGCGTTGATCCCGAAAATGATACGCCTGAAA-AATTGAAGAAAT 328
BSNT_03243___ 326 TTGCCGCAAATTATCCATTATCTTTTGATAACTGGGATTTTCTCACGGGA 375
||||.||.||.||.||..|...||||.|.||.|||||.|||.|.||.|||
BL03304___ypm 329 TTGCGGCCAACTACCCGCTCAGTTTTCAAAATTGGGACTTTTTAACCGGA 378
BSNT_03243___ 376 TACAGCCAGAGTGAGATTGAGGAGTTCGCACTTAAGAGCTTTAAAGCGAT 425
|||...|||...||.||.||..||||.||.||.||.|||||||||.|.||
BL03304___ypm 379 TACTCGCAGGAAGAAATCGAAAAGTTTGCGCTGAAAAGCTTTAAATCAAT 428
BSNT_03243___ 426 CGTAAAGAAGCCGGAGGGAGAGGACCAAGTGATTCATCAATCTTCTTTTT 475
|||.||.||.||.||.|..|||||.||.||||||||.|||||.||.||||
BL03304___ypm 429 CGTGAAAAAACCTGAAGATGAGGATCAGGTGATTCACCAATCGTCATTTT 478
BSNT_03243___ 476 GGTTAGTAGGCCCGAACGGCAAGGTGCTGAAAGATTATAATGGAGTGGA- 524
...||||.|..|..||||||||.||..|.||.||||||.|.| |||.|
BL03304___ypm 479 ATCTAGTCGATCAAAACGGCAAAGTCGTCAAGGATTATGACG--GTGCAA 526
BSNT_03243___ 525 -AAATACACCGTACGATGAAATTATCGCCGATGTAAAATCAGCAGGCGCA 573
||||||.||||||||||||||.|||||||||.|.| ||.|||
BL03304___ypm 527 GAAATACGCCGTACGATGAAATCATCGCCGATATTA-------AGACGC- 568
BSNT_03243___ 574 CTCAAGGAA----GTTAGAAGACTAGGCATTTGCAAATCTTCTAAAACAT 619
.|||| ||| ||
BL03304___ypm 569 ----TGGAAAACCGTT-GA------------------------------- 582
BSNT_03243___ 620 GA 621
BL03304___ypm 582 -- 582
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