Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03251 and BL03301
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:55
# Commandline: needle
# -asequence dna-align/BSNT_03251___ypkP.1.5803.seq
# -bsequence dna-align/BL03301___ypkP.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03251___ypkP-BL03301___ypkP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03251___ypkP-BL03301___ypkP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03251___ypkP
# 2: BL03301___ypkP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 719
# Identity: 387/719 (53.8%)
# Similarity: 387/719 (53.8%)
# Gaps: 193/719 (26.8%)
# Score: 837.5
#
#
#=======================================
BSNT_03251___ 1 ---TTGGTTCGCTACAGCCTTCTGGTGGTTTA------TATT--GTGTAT 39
||| ||||| |.||..|||| |||| |..|||
BL03301___ypk 1 ATGTTG---CGCTA--------TTGTTTTTTATGGATTTATTCGGCCTAT 39
BSNT_03251___ 40 ATGCTGTTAAAAAATATGAAACAATTATTTA-----ATCAAACAATGCTC 84
|||||..|.||..||||.||.| ||.|..| ..||.||| ||.
BL03301___ypk 40 ATGCTCATCAAGCATATCAAGC--TTCTGCAGGCGCTGCAGACA---CTT 84
BSNT_03251___ 85 GATCCCCGTCTATCATACAAAAAACAGAT-GACTCTTGTGTACGAACAGC 133
|||||.||.||.||.||....||.||||| ||..| |||.|..||..|||
BL03301___ypk 85 GATCCGCGCCTTTCGTATGCCAATCAGATGGAAGC-TGTCTTTGATAAGC 133
BSNT_03251___ 134 CAAAGGCGTTTTTGGAAGGCTGTATCGGCATATCCGGTTCAGTTGTGACG 183
|.||.||.||||||..|||.||.||||||.||.||||||||...||..|.
BL03301___ypk 134 CGAAAGCTTTTTTGCGAGGGTGCATCGGCTTAACCGGTTCAACCGTTTCC 183
BSNT_03251___ 184 ATCCATCAGCCAGAGC-CAATACCACAC----GGTCCTGTTTTGTATGTG 228
|||||| ||||.| .||.|.|.| | ||.||.||..|.||||||
BL03301___ypk 184 ATCCAT----CAGAACGGAAGATCGC-CGGCTGGCCCCGTGCTTTATGTG 228
BSNT_03251___ 229 CATCC---------CCGTTTGCATTTGGCTGAACTGGCCTTAATTGC-TG 268
||.|| || ||.|.||.||.|||.| ..||| ||
BL03301___ypk 229 CACCCAAAGCTCGGCC---------TGTCAGAGCTTGCCGT-GCTGCTTG 268
BSNT_03251___ 269 GATATATTGAGGAACCGGC--CGGCTTTATCGCCAACCCAAAAGTGTTCC 316
||.|..||||..||.|.|| || |||.|.|| ||.|||
BL03301___ypk 269 GACACCTTGACAAAACCGCTTCG--TTTTTTGC-----------TGATCC 305
BSNT_03251___ 317 GCTTGCCTT---TTATC----GGGCAATGGCTGG----ATCGGATGGATG 355
||..||||| ||||| |..||..|||||| ||...||||..|
BL03301___ypk 306 GCGCGCCTTTCGTTATCCGCTGATCAGCGGCTGGCTCAATAAAATGGCCG 355
BSNT_03251___ 356 TGATTTCAGA-----CGGTGATTCAGAAAAGGTA-------TATGAAGAT 393
.| .||||| || |.||.||||.| || |||||.
BL03301___ypk 356 CG--GTCAGAAAAAGCG------CCGACAAGGAAGCATCGCTA-GAAGAA 396
BSNT_03251___ 394 GTGACAAAACAG-----CTGGAAAAGGGACAAAGCCTGATTCTTTC---- 434
||| .||.|| |.||||| ||.||||||.|.|||.|.||
BL03301___ypk 397 GTG---GAAGAGATTCTCCGGAAA--GGCCAAAGCTTTATTATGTCTGAA 441
BSNT_03251___ 435 --------ACTAGATGGTTC---TATTGATCCTGTAGAACTTGCGGCCCG 473
|||.||| |.| |.||.|||| |.|| |||.||
BL03301___ypk 442 GATGACGGACTCGAT--TACAAATCTTTATCC---AAAA-----GGCTCG 481
BSNT_03251___ 474 CTATCATCTTCCGTTGGTGATG--GTGGAAACGAAAGGAACAGATAACAT 521
..| |||||.|.|| || ||.|||||....||.||.||..||||
BL03301___ypk 482 GCA-----TTCCGATCGT--TGCAGTCGAAACAGCCGGTACGGAAGACAT 524
BSNT_03251___ 522 GCAAAAGGGCTCGTTTTTTAA-ACGCTTAAAACCGGCAGACATTGAATTG 570
|.||||.|||.||||.||.|| |.|| |.|.|||.|..||.||.||.|||
BL03301___ypk 525 GAAAAAAGGCACGTTGTTCAAGAGGC-TGAGACCTGTTGATATCGATTTG 573
BSNT_03251___ 571 ----TCCTTTTCAAAAGCTTATATACCTGCCA------ATGA---AAAAC 607
||| |||.|.|| |||| |||||
BL03301___ypk 574 ACGATCC-----------------ACCCGGCATACGTCATGACTGAAAAC 606
BSNT_03251___ 608 AA-----TTACGTGCATAA 621
|| || ||.||||||
BL03301___ypk 607 AAACAGCTT-CGGGCATAA 624
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