Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03477 and BL03279

See Amino acid alignment / Visit BSNT_03477 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:27
# Commandline: needle
#    -asequence dna-align/BSNT_03477___ypuA.1.5803.seq
#    -bsequence dna-align/BL03279.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03477___ypuA-BL03279.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03477___ypuA-BL03279.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03477___ypuA
# 2: BL03279
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 914
# Identity:     645/914 (70.6%)
# Similarity:   645/914 (70.6%)
# Gaps:          58/914 ( 6.3%)
# Score: 2181.0
# 
#
#=======================================

BSNT_03477___      1 TTGAAGAAAATTTGGA---TTGGAATGCTGGCAGCGGCCGTTTTG-CTGC     46
                     |||||.|||   |.||   |.|||||..|..|||    |.||.|| ||||
BL03279            1 TTGAAAAAA---TCGATACTAGGAATCTTTACAG----CATTGTGTCTGC     43

BSNT_03477___     47 TGACGGTTCCGAAGGTCAGTCTCGCGGATGCCGCAGTTGGAGATGTCATT     96
                     |.|...|.|||.|||||||..||||.||.||||||||.||.||||||||.
BL03279           44 TCATTTTCCCGCAGGTCAGCTTCGCTGACGCCGCAGTGGGTGATGTCATC     93

BSNT_03477___     97 GTAACACTAGGTGCTGATTTGTCAGAATCC--GACAAACAAAAAGTGCTT    144
                     ||.||.||.||....||.|||||  ||.||  ||||.|||||||||..|.
BL03279           94 GTCACGCTGGGGAAAGACTTGTC--AAGCCAGGACAGACAAAAAGTATTA    141

BSNT_03477___    145 GATGAAATGAATGTCCCTGATAATGCCACAACGGTAACC---GTGACCAA    191
                     .|.||||||||||..|||||.|||||.||.|   |.|.|   |||||.||
BL03279          142 AAAGAAATGAATGCGCCTGAAAATGCGACCA---TCATCGAGGTGACAAA    188

BSNT_03477___    192 TAAGGAAGAACATGAATATTTAGGAAAATATATATCAAACGCGCAAATCG    241
                     |.|.||.||.|||.||||||||||..|.||||||.|.||.||.|||||||
BL03279          189 TGATGAGGAGCATAAATATTTAGGGGATTATATACCGAAAGCACAAATCG    238

BSNT_03477___    242 GATCGAGAGCGATTTCTTCATCGTCAATCACCATTGCCAAAAAAGGCTCC    291
                     ||.|.||||||||||||||.||.|||||.|||.|.||.|||||||||.||
BL03279          239 GAACAAGAGCGATTTCTTCTTCTTCAATTACCGTAGCGAAAAAAGGCACC    288

BSNT_03477___    292 GGATTGAATGTTGAGACCCATAATATCAGCGGCATCACGGATGAAATGTA    341
                     ||.|||.|.|||.||||.||.|||||||||.|.||.||.|||||.|||||
BL03279          289 GGTTTGGAAGTTCAGACACACAATATCAGCAGAATTACAGATGAGATGTA    338

BSNT_03477___    342 CCTGAATGCACTGATGACAGCCGGTGTGAAAGATGCGAAGGTGTATGTTA    391
                     ..||||.||.||||||||.||||||||.|||||.||.||.||.|||||.|
BL03279          339 TTTGAACGCGCTGATGACGGCCGGTGTAAAAGACGCCAAAGTCTATGTCA    388

BSNT_03477___    392 CAGCACCGTTTGAAGTATCCGGGACTGCGGCTTTAACTGGATTGATTAAG    441
                     |.||.|||||||||||.||.||.||.||.||||||||.||||||||.||.
BL03279          389 CCGCTCCGTTTGAAGTGTCAGGCACAGCCGCTTTAACCGGATTGATGAAA    438

BSNT_03477___    442 GCGTATGAAGTTTCTTCTGACGAAGCGATCTCGGAGGATGTTAAGCAGGT    491
                     |||||||||....||||.|.||||...||.||.||.|||||.||..||||
BL03279          439 GCGTATGAAACGACTTCGGGCGAAAAAATTTCCGAAGATGTGAAAAAGGT    488

BSNT_03477___    492 CGCCAACCAAGAGCTTGTCACGACATCAGAGCTTGGAGACAAAATCGGTA    541
                     |||.||..|||||||||||||.||.|||||||||||.||.||||||||.|
BL03279          489 CGCGAATGAAGAGCTTGTCACCACTTCAGAGCTTGGCGAGAAAATCGGCA    538

BSNT_03477___    542 ACGAAAATGCGGCAGCCCTGATTGCAAAAATCAAAGAAGAGTTTGCTAAA    591
                     ..|||||.|||.||||.|||||.||.|||.||||.|||||..|..|.|||
BL03279          539 GTGAAAACGCGTCAGCGCTGATGGCCAAAGTCAAGGAAGAAATCTCGAAA    588

BSNT_03477___    592 AACGGGGTGCCTGA-TAATAAAGCTGACATCGA-AAAACAAGTGGA--CG    637
                     |||||.||.||.|| |.| ||||..||..|.|| |||||.| |.||  ||
BL03279          589 AACGGAGTTCCCGAGTCA-AAAGAGGAATTGGAGAAAACGA-TTGATTCG    636

BSNT_03477___    638 ACGCAGCTTCTGATTTAAACGTCACACTTACTGACAG-CCAAAAGAACCA    686
                       ||.|||||.||..|...|||.|||||.||.|| || .||.||.|||..
BL03279          637 --GCTGCTTCCGAACTTGGCGTGACACTCACAGA-AGATCAGAAAAACTC    683

BSNT_03477___    687 GCTTGTCTCCCTATTCAATAAGATGAAAAACGCTGACATTGACTGGGGAC    736
                     .|||.|.||..||||.|||||.||||||||...|.|.||.||||||...|
BL03279          684 TCTTATATCTTTATTTAATAACATGAAAAATATTAATATCGACTGGAACC    733

BSNT_03477___    737 AGGTCAGTGACCAGCTAGATAAAGCGAAAGATAAGATTACGAAATTCATA    786
                     ||||..|.||||||||.||.|||||.||.|||||.||.|||||||||.|.
BL03279          734 AGGTTGGAGACCAGCTTGACAAAGCAAAGGATAAAATCACGAAATTCTTG    783

BSNT_03477___    787 GAATCAGATGAAGGCAAAAACTTCATCCAGAAAGTCATTGATTTCTTCGT    836
                     ||.||.||.|||||..|||||||..|.||.|||.|.||.||.|||||.||
BL03279          784 GATTCTGAAGAAGGACAAAACTTTCTTCAAAAACTGATCGACTTCTTTGT    833

BSNT_03477___    837 ATCTATCTGGAATGCGATTGTATCTATATTCA------------------    868
                     .|||.|.|||||.||.||.||.||..||||||                  
BL03279          834 GTCTCTGTGGAACGCCATCGTTTCCGTATTCACCGGCGGCGGCACCTCAG    883

BSNT_03477___    869 -----AA----TAA    873
                          ||    |||
BL03279          884 AGTCCAACGGTTAA    897


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03477 and BL03279

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
