Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02952 and BL03276
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:38
# Commandline: needle
# -asequence dna-align/BSNT_02952___yndL.1.5803.seq
# -bsequence dna-align/BL03276.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02952___yndL-BL03276.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02952___yndL-BL03276.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02952___yndL
# 2: BL03276
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 909
# Identity: 525/909 (57.8%)
# Similarity: 525/909 (57.8%)
# Gaps: 225/909 (24.8%)
# Score: 1443.0
#
#
#=======================================
BSNT_02952___ 1 ATGAAACCGGCCAAAGTATCCCTGCTCCGCCGTTTGCTCCATTCCTTGAA 50
|||||||||||||||||||||||.||||.|||.||||||||.|.|.||||
BL03276 1 ATGAAACCGGCCAAAGTATCCCTACTCCACCGATTGCTCCAGTGCCTGAA 50
BSNT_02952___ 51 GCA---TGTTGATTGTAACATAGCCAAACGTTTTCCATCAACTATTAAAA 97
||| ||||||||||||||.||..||.||||||.||.|||
BL03276 51 GCAATGTGTTGATTGTAACACAGTAAATCGTTTTACAGCAA--------- 91
BSNT_02952___ 98 TTGTAAA-ATTATTGTTTAT-TTTTATGGTATTT--ACTCCGATTTCTT- 142
|||| |||.||||..|| ||||||.| |||| .||..|||.||.|
BL03276 92 ---TAAACATTTTTGTGAATATTTTATTG-ATTTCGGCTGTGATCTCATT 137
BSNT_02952___ 143 --CAATTTATGCTG-------------AA-----------GAT--ATATA 164
||..||.||||| || ||| ||||
BL03276 138 CCCATATTCTGCTGCGGCCCATGGCGCAACACAGTCCGGCGATCAATAT- 186
BSNT_02952___ 165 TCAGAATTTTGAGGAATTAAAAAACAATGAAGATC---CTTCT-----GA 206
||| |..|||||.|||||..|....|||||||||| ||||| .|
BL03276 187 TCA-AGCTTTGAAGAATTGGAGCGGAATGAAGATCCAGCTTCTTACCGAA 235
BSNT_02952___ 207 TTACGGTGTTGTTACGAAAGAAACCGGAA----GCC----CTGTTCTTGT 248
||||||.| ||||| ||.|| ||| ||..||.||
BL03276 236 TTACGGAG---------AAGAA--CGCAAGAGTGCCGATGCTCATCATG- 273
BSNT_02952___ 249 TTTAGCTATTCACGGAGGAGGTATTGAAGGTGGGACAAGTGAAGTAGCCA 298
||.||.||.|||||.||.||.|||...||.||.||.|||.|.||||
BL03276 274 ----GCCATCCATGGAGGCGGCATCGAACCCGGAACGAGCGAAATCGCCA 319
BSNT_02952___ 299 GAGAGCTCAG----CAAAGAGTACTCGATGTATTTATTTGAAGGCTTAAA 344
..|| || ||||.|.||.||..||||.||.||||||||..|.||
BL03276 320 ATGA----AGTGTCCAAAAACTATTCCCTGTACTTGTTTGAAGGGCTGAA 365
BSNT_02952___ 345 ATCTGCAGGAAACTCAGTCCTGCACATTACGAGCACGCACTTTGATGAAC 394
|||..||||.||..|.|.|||.||||||||.|||||||..|||||.||.|
BL03276 366 ATCATCAGGCAATACGGACCTTCACATTACAAGCACGCGTTTTGACGAGC 415
BSNT_02952___ 395 CTCGGGCCCTTAAAATGACGGGAAATCATGAATATGTCATTTCATTACAC 444
|...|||.||...|||.||.|.||..||..|.||||||||.||..|.|||
BL03276 416 CAGCGGCGCTCGCAATTACTGCAAGCCACCAGTATGTCATGTCGCTCCAC 465
BSNT_02952___ 445 GGGTA-CGCAGAAGAAGATCAGC-AGATCGAAGTCGGCGGTACAGATCGC 492
||.|| ..||| .||||| |.|| |.||..||||.|||||.|||||.|||
BL03276 466 GGCTATTACAG-TGAAGA-CCGCGATATTAAAGTAGGCGGCACAGACCGC 513
BSNT_02952___ 493 G-TAAGAGCGGCAGATTTAGTTGAGAAATTGCAGCATG--CC------GG 533
| |||.|.|.|.|.| ||.||||| || ||| || || ||
BL03276 514 GCTAAAATCAGAATA-TTGGTTGA-----TG-AGC-TGAACCGCTCGGGG 555
BSNT_02952___ 534 TTTTCCTGCTGTATTGCT------------CAA-TA---CGGACCATCCA 567
|||.|| ||||.|.|||| ||| || |||| |.|||
BL03276 556 TTTGCC-GCTGAAATGCTGGGGACAGATGACAAGTATGCCGGA--ACCCA 602
BSNT_02952___ 568 CATGCGGGCGTTAGTCCGAATAACATTGCAAATAAATCAAAAACAGGTT- 616
||||||||||||.||.||.||.|| |.||
BL03276 603 --------------TCCGAATAACATCGCCAACAAGTC-------GCTTT 631
BSNT_02952___ 617 ------TAAGTATCCAGATAGAAATGAGCACAGGCTTTCGAAAGTCTTTG 660
|.||.||.|||.|.|||||||||||.||.||.||.||.|||||.
BL03276 632 CCGGGCTGAGCATTCAGCTTGAAATGAGCACGGGTTTCCGCAAATCTTTA 681
BSNT_02952___ 661 TTCGGCATCTTTTCTTTAAAAAGCAGAGCTGTTACTCAAAATGAGAGGTT 710
||||.|...|||.|..|||||..|||.||.|..||.|||||.||.|.|||
BL03276 682 TTCGACCGGTTTACACTAAAAGACAGGGCGGCGACGCAAAACGAAACGTT 731
BSNT_02952___ 711 TTATAAGTTTACAGAAG-TGATG------TTCCGTTTTC-TCAAA--TAT 750
|||....|||||| ||| ||.|| || |.||| |.||| |||
BL03276 732 TTACCGATTTACA-AAGCTGCTGACAGATTT---TATTCATGAAAACTAT 777
BSNT_02952___ 751 -----AGCTACTGA------------------------------------ 759
|| ||.||
BL03276 778 GAAGAAG--ACGGAGGGGATTTCCCCTCTGCAAAAATAAAACACCCCCTT 825
BSNT_02952___ 759 --------- 759
BL03276 826 CAAGTGTGA 834
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