Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03479 and BL03275
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:28
# Commandline: needle
# -asequence dna-align/BSNT_03479___lysA.1.5803.seq
# -bsequence dna-align/BL03275___lysA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03479___lysA-BL03275___lysA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03479___lysA-BL03275___lysA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03479___lysA
# 2: BL03275___lysA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1366
# Identity: 982/1366 (71.9%)
# Similarity: 982/1366 (71.9%)
# Gaps: 86/1366 ( 6.3%)
# Score: 3440.5
#
#
#=======================================
BSNT_03479___ 1 ATGACATTGTTCTTACACGGCACAAGCAGACAAAATCAACATGGTCATTT 50
|||||.||||||||.||.||||||||||||.||...||.||..|
BL03275___lys 1 ------TTGTTTTTACACGGTACTAGCAGACAAAATGAAAGAGGGCACCT 44
BSNT_03479___ 51 AGAAATCGGAGGTGTGGATGCTCTCTATTTAGCGGAGAAATATGGTACAC 100
.||||||||.|||||.||||.|||.|..||.||.||.|.|||.||.||||
BL03275___lys 45 CGAAATCGGCGGTGTCGATGTTCTATCATTGGCAGAAAGATACGGAACAC 94
BSNT_03479___ 101 CTCTTTACGTATATGATGTGGCTTTAATACGTGAGCGTG--CTAAAAGCT 148
|||||||.|||||.|||||.||..|.||..|.|||||.| |.|||| |
BL03275___lys 95 CTCTTTATGTATACGATGTCGCGCTGATTAGAGAGCGCGCCCGAAAA--T 142
BSNT_03479___ 149 TTAAGCAGGCGTTTATTTTCGCAGG--GC-----TGAAAGCACAGGTGGC 191
|..||.||||.||.| ||| || |.|||||.|||||.||
BL03275___lys 143 TCCAGAAGGCATTCA-------AGGAAGCCGGTTTAAAAGCGCAGGTAGC 185
BSNT_03479___ 192 ATATGCGAGCAAAGCATTCTCATCAGTTGCAATGATTCAGCTCGCTGAGG 241
.|||||.|||||.||.||.|||||.|||||.|||||||||||.||.||..
BL03275___lys 186 GTATGCAAGCAAGGCGTTTTCATCGGTTGCCATGATTCAGCTTGCCGAAC 235
BSNT_03479___ 242 AAGAGGGACTTTCTTTAGATGTTGTATCCGGAGGAGAGCTATATACGGCT 291
|||||||.||.|||.|.|||||.|||||.|||||||||||.|..||
BL03275___lys 236 AAGAGGGGCTGTCTCTGGATGTGGTATCGGGAGGAGAGCTTTTCAC---- 281
BSNT_03479___ 292 GTTGCG------GCAGGCTTTCCGGCAGAACGCATCCACTTTCATGGAAA 335
|||| |||||.||.||.||.||.||.||.||.|||||.|||||
BL03275___lys 282 --TGCGATCAAAGCAGGGTTCCCAGCTGAGCGGATTCATTTTCACGGAAA 329
BSNT_03479___ 336 CAATAAGAGCAGGGAAGAACT-GCGCATGGCGCTTGAGCACCGCATCGGC 384
||||||||||...|||||||| || |||||||||.|||||.|..||||||
BL03275___lys 330 CAATAAGAGCCCTGAAGAACTAGC-CATGGCGCTGGAGCATCAAATCGGC 378
BSNT_03479___ 385 TGCATTGTGGTGGATAA-TTTCTATGAAATTGCGCTTCTTGAAGACCTAT 433
|||||.|||.|.||||| |||| |.||.||.||..||...|||||.||.|
BL03275___lys 379 TGCATCGTGCTCGATAACTTTC-ACGAGATCGCCATTACAGAAGATCTTT 427
BSNT_03479___ 434 GTAAAGAAACGGGTCACTCCATCGATGTTCTTCTTCGGATCACGCCCGGA 483
|.||...|.|.||.||..|..|.||.|||.|.||..|.|||||.||.|||
BL03275___lys 428 GCAAGCGATCAGGACAAACTGTAGACGTTTTGCTCAGAATCACTCCGGGA 477
BSNT_03479___ 484 GTAGAAGCGCATACGCATGACTACATTACAACGGGCCAGGAAGATTCAAA 533
||.||||||||.|||||.||.||.|||||.|||||.|||||||||||.||
BL03275___lys 478 GTTGAAGCGCACACGCACGATTATATTACGACGGGGCAGGAAGATTCCAA 527
BSNT_03479___ 534 GTTTGGTTTCGACCTTCATAACGGACAAACTGAACGGGCCATCGAACAAG 583
.||.|||||.||.||.|||||.|||||....||||..|||||||||||||
BL03275___lys 528 ATTCGGTTTTGATCTGCATAATGGACAGGTCGAACAAGCCATCGAACAAG 577
BSNT_03479___ 584 TATTACAATCG-----GAACACATTCAGCTGCTGGGTGTCCATTGCCATA 628
|..|.|..||| | .||.||||.||.||.||.||.|||||.|
BL03275___lys 578 TCCTCCGCTCGTCTGCG-----TTTAAGCTCCTCGGCGTGCACTGCCACA 622
BSNT_03479___ 629 TCGGATCGCAAATCTTTGATACGGCCGGTTTTGTGTTAGCAGCGGAAAAA 678
||||.||||||||.|||||||||||.||.|||||..|.|||||.||.||.
BL03275___lys 623 TCGGTTCGCAAATTTTTGATACGGCAGGATTTGTCCTTGCAGCAGACAAG 672
BSNT_03479___ 679 ATCTTCAAAAAACTAGACGAGTGGAGAGATTCATA----TTCATTTGTAT 724
||.|||.|.||.||.|..||.|||.|.||..|.|| ||||| |
BL03275___lys 673 ATTTTCGAGAAGCTTGCGGAATGGCGGGAGACTTACTCTTTCAT-----T 717
BSNT_03479___ 725 CC--AAGGTGCTGAATCTTGGAGGAGGTTTCGGCATTCGTTATACGGAAG 772
|| || |||||.||||||||.||.||.||||||||.||.|||||..|||
BL03275___lys 718 CCGGAA-GTGCTCAATCTTGGCGGGGGCTTCGGCATCCGCTATACAAAAG 766
BSNT_03479___ 773 ATGATGAACCGCTTCATGCCACTGA---ATACGTTGAAAAAATTATCGAA 819
|.||.||.||||| |||..|||| .||.|||||||||||.|||||.
BL03275___lys 767 ACGACGAGCCGCT---TGCAGCTGATGTTTATGTTGAAAAAATCATCGAG 813
BSNT_03479___ 820 GCTGTGAAAGAAAATGCTTCCCG----TTACGGTTTTGACATCCCGGAAA 865
||.||.||||.||||| ||| ||.|||.|||||||||||.||.|
BL03275___lys 814 GCGGTCAAAGCAAATG----CCGAGCATTTCGGCTTTGACATCCCTGAGA 859
BSNT_03479___ 866 TTTGGATCGAACCGGGCCGTTCTCTCGTGGGAGACGCAGGCACAACTCTT 915
|||||||||||||.|||||.||||||||.||.||.||.||.||.||.||.
BL03275___lys 860 TTTGGATCGAACCAGGCCGGTCTCTCGTCGGTGATGCGGGGACTACGCTG 909
BSNT_03479___ 916 TATACGGTTGGCTCTCAAAAAGAAGTGCCGGGTGTCCGCCAGTATGTGGC 965
||.|||.|.||.|||||||||||.||||||||..|.|||.|.|||||.||
BL03275___lys 910 TACACGATCGGTTCTCAAAAAGAGGTGCCGGGCATTCGCAAATATGTAGC 959
BSNT_03479___ 966 AGTAGACGGAGGCATGAACGACAATATTCGTCCTGCGCTTTACCAAGCTA 1015
..|.|||||.|||||||.|||.|||||..|.||.||||||||..|.||.|
BL03275___lys 960 CATCGACGGCGGCATGAGCGATAATATCAGGCCGGCGCTTTATGAGGCAA 1009
BSNT_03479___ 1016 AATATGAAGCTGCGGCAGCCAACAGGATCGGAGAAGC---GCATGACA-- 1060
||||||||||.||.|..||||||||||| ||| | ||.||.||
BL03275___lys 1010 AATATGAAGCAGCCGTCGCCAACAGGAT----GAA-CGATGCTTGTCATG 1054
BSNT_03479___ 1061 AAACGGTATCAATTGCCGGAAAGTGCTGTGAAAGCGGAGATATGCTGATT 1110
|.||.|.||||||.||.|||||.|||||.|||||||||||||||||||||
BL03275___lys 1055 ATACCGCATCAATCGCAGGAAAATGCTGCGAAAGCGGAGATATGCTGATT 1104
BSNT_03479___ 1111 TGGGATATTGACCTGCCGGAAGTAAAAGAAGGCGATCTTCTTGCCGTTTT 1160
||||||.|.||..|.||.|||||....||.||.|||.|.||.||||||||
BL03275___lys 1105 TGGGATTTGGAAATCCCCGAAGTTCGCGACGGAGATGTGCTCGCCGTTTT 1154
BSNT_03479___ 1161 TTGTACAGGCGCTTATGGATACAGCATGGCCAACAATTATAACCGTATTC 1210
.||.||.||.||.||.||.|||||||||||||||||.||.|||||.||||
BL03275___lys 1155 CTGCACCGGTGCGTACGGCTACAGCATGGCCAACAACTACAACCGCATTC 1204
BSNT_03479___ 1211 CGAGACCCGCCGTTGTATTTGTCGAAAACGGTGAGGCTCATTTAGTCGTG 1260
||.|.||.|||||.||.||||||||..||||.||.||.||..|.|||.|.
BL03275___lys 1205 CGCGCCCGGCCGTCGTCTTTGTCGAGGACGGGGAAGCGCAGCTCGTCATT 1254
BSNT_03479___ 1261 AAGCGAGAAACATACGAGGATATTGTAAAACTTGATCTGCCATTTAAAAC 1310
.||.||||.||.||.||||||||.||.||.||.||||||||..|.|||.|
BL03275___lys 1255 CAGAGAGAGACGTATGAGGATATCGTCAAGCTGGATCTGCCGCTGAAATC 1304
BSNT_03479___ 1311 AGGTGTAAAGCAATAA 1326
....||.||.||||||
BL03275___lys 1305 GAAAGTCAAACAATAA 1320
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