Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00197 and BL03273
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:51
# Commandline: needle
# -asequence dna-align/BSNT_00197___sigH.1.5803.seq
# -bsequence dna-align/BL03273___sigH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00197___sigH-BL03273___sigH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00197___sigH-BL03273___sigH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00197___sigH
# 2: BL03273___sigH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 672
# Identity: 544/672 (81.0%)
# Similarity: 544/672 (81.0%)
# Gaps: 15/672 ( 2.2%)
# Score: 2251.0
#
#
#=======================================
BSNT_00197___ 1 GTGAATCTACAGAACAACAAGGGAAAATTCAACAAAGAGCAG-------- 42
|||||..||||.||||||.||||||||||||.||||||.|||
BL03273___sig 1 GTGAACTTACAAAACAACCAGGGAAAATTCAGCAAAGAACAGTTCAGCAA 50
BSNT_00197___ 43 -------TTTTGCCAGTTGGAGGACGAGCAGGTCATTGAAAAGGTTCATG 85
||||||||||||||.|||||||||||||||||||.||||||||
BL03273___sig 51 AGAACGTTTTTGCCAGTTGGAAGACGAGCAGGTCATTGAAATGGTTCATG 100
BSNT_00197___ 86 TTGGGGACAGTGATGCGTTAGATTACTTGATTACGAAGTACCGAAACTTT 135
|.||.|||||||||||||||||||||||||||||.||||||||.||.|||
BL03273___sig 101 TCGGAGACAGTGATGCGTTAGATTACTTGATTACAAAGTACCGTAATTTT 150
BSNT_00197___ 136 GTTCGGGCAAAAGCAAGATCCTATTTCTTAATAGGGGCGGACAGAGAGGA 185
||..|||||||||||||||||||.||||||||.|||||.||..|.||.||
BL03273___sig 151 GTAAGGGCAAAAGCAAGATCCTACTTCTTAATCGGGGCTGATCGGGAAGA 200
BSNT_00197___ 186 TATTGTTCAGGAAGGCATGATAGGCCTCTATAAGTCTATTCGTGACTTCA 235
|||.|||||||||||||||||.||.|||||.||.|||||.|||||.||.|
BL03273___sig 201 TATCGTTCAGGAAGGCATGATTGGACTCTACAAATCTATCCGTGATTTTA 250
BSNT_00197___ 236 AAGAGGACAAGCTTACCTCATTCAAAGCTTTCGCAGAATTATGTATTACC 285
.||||||||||||.||.||||||||||||||.|||||||||||.||||||
BL03273___sig 251 GAGAGGACAAGCTGACTTCATTCAAAGCTTTTGCAGAATTATGCATTACC 300
BSNT_00197___ 286 CGCCAAATTATTACCGCAATAAAGACAGCTACTCGCCAGAAACACATTCC 335
|||||||||||||||||.||.||.||||||||||||||||||||.|||||
BL03273___sig 301 CGCCAAATTATTACCGCTATCAAAACAGCTACTCGCCAGAAACATATTCC 350
BSNT_00197___ 336 TTTGAATTCCTACGTCTCATTAGATAAACCGATTTTTGATGAAGAATCAG 385
..|.|||||.||.||.||..|.||.||.||.||||.|||.||.|||||||
BL03273___sig 351 GCTCAATTCTTATGTGTCGCTGGACAAGCCCATTTATGACGAGGAATCAG 400
BSNT_00197___ 386 ACCGAACGCTGCTGGATGTCATTTCAGGAGCGAAAACCTTAAATCCTGAG 435
||||.|||||.||.||.||.||||||||.||.||...|.|.||||||||.
BL03273___sig 401 ACCGGACGCTTCTCGACGTGATTTCAGGGGCCAAGGTCATGAATCCTGAA 450
BSNT_00197___ 436 GAAATGATCATTAATCAGGAAGAATTTGATGATATTGAAATGAAAATGGG 485
||..|||||||.||||||||||||||.||||||||.||..||||||||||
BL03273___sig 451 GAGCTGATCATCAATCAGGAAGAATTCGATGATATCGAGCTGAAAATGGG 500
BSNT_00197___ 486 AGAACTATTAAGTGATTTAGAGAGAAAAGTACTCGTCTTATATCTCGACG 535
||||.|..|.|||||||||||.||||||||.||.|...|.||||||||||
BL03273___sig 501 AGAATTGCTTAGTGATTTAGAAAGAAAAGTTCTTGCGCTCTATCTCGACG 550
BSNT_00197___ 536 GGAGAAGTTACCAAGAGATTTCTGATGAACTGAACCGACATGTGAAATCG 585
|.|||...||.||.||.||.||.||.|||.|.|||||.|||||.||||||
BL03273___sig 551 GAAGATCCTATCAGGAAATATCCGAAGAATTAAACCGCCATGTAAAATCG 600
BSNT_00197___ 586 ATCGACAATGCCCTTCAGCGTGTGAAACGCAAGCTGGAGAAGTACTTGGA 635
|||||.|||||.||.||||||||.|||.|.|||||.||.||||||.||||
BL03273___sig 601 ATCGATAATGCGCTCCAGCGTGTCAAAAGGAAGCTTGAAAAGTACCTGGA 650
BSNT_00197___ 636 AATTCGCGAAATCAGTTTGTAA 657
..|.|||||||||||.|||||.
BL03273___sig 651 GCTCCGCGAAATCAGCTTGTAG 672
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