Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00185 and BL03265
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:50
# Commandline: needle
# -asequence dna-align/BSNT_00185___ispD.1.5803.seq
# -bsequence dna-align/BL03265___ispD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00185___ispD-BL03265___ispD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00185___ispD-BL03265___ispD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00185___ispD
# 2: BL03265___ispD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 759
# Identity: 499/759 (65.7%)
# Similarity: 499/759 (65.7%)
# Gaps: 123/759 (16.2%)
# Score: 1629.0
#
#
#=======================================
BSNT_00185___ 1 ATGAGTTATGATGTGGTGATTCCTGCAGCCGGACAGGGAAAGCGGATGAA 50
||||.||||||.||.||.||||||||.||||||||.||.||.||.|||||
BL03265___isp 1 ATGAATTATGAAGTCGTCATTCCTGCCGCCGGACAAGGTAAACGAATGAA 50
BSNT_00185___ 51 GGCAGGGAGAAATAAACTGTTCATTGAGCTGAAAGGAGACCCGGTGATCA 100
.||.||||.|||.||||||||.||.|||..|||||||...||.|||||.|
BL03265___isp 51 TGCCGGGAAAAACAAACTGTTTATCGAGGCGAAAGGAATACCTGTGATTA 100
BSNT_00185___ 101 TACACACGTTAAGAGTGTTTGACAGCCA-----CCGGCAGTGCGATAAA- 144
|.||.||.||||..||||||||.|.||| ||.||| |||
BL03265___isp 101 TTCATACATTAAAGGTGTTTGAAAACCATGATGCCTGCA-------AAAG 143
BSNT_00185___ 145 -ATCATTTTGGTGATTAACGAGCAGGAGCGGGAGCACTTTCAGCAATTGC 193
||||||.|.||.||.||.||.|||| |||| |
BL03265___isp 144 GATCATTCTTGTCATCAATGAACAGG------------------AATT-C 174
BSNT_00185___ 194 TGTGCGATT----ACCCGTTTCAA----------------ACTTCAATTG 223
.||| .||| ||||.|||.|| |||.|.||.|
BL03265___isp 175 GGTG-AATTCAACACCCTTTTAAAAACCTATCATTTTAAGACTCCGATCG 223
BSNT_00185___ 224 AGCTTGTTGCAGGCGGAGAAGAGCGTCAGCACAGTGTGTATAAGGGGCTG 273
||.|.||..|.||||||..|||.||.|||||.||.||.|.|..|||..|.
BL03265___isp 224 AGATGGTGCCGGGCGGAAGAGAACGCCAGCAAAGCGTTTTTGCGGGCATT 273
BSNT_00185___ 274 AAAG----CCGTAAAGCAGGAAAAGATTGTCCTTGTACATGACGGTGCCC 319
|||| |.|.|||| ||||||.| |||||.||.||||||||.||..
BL03265___isp 274 AAAGCGGCCGGCAAAG-AGGAAACG---GTCCTCGTCCATGACGGAGCAA 319
BSNT_00185___ 320 GCCCATTTATAAAAC--------AT-GAACAAATTGACGAACTGATCGCA 360
|.||.|||||.|||| || |||||..|||.||| ||..|||
BL03265___isp 320 GACCTTTTATTAAACGGGAATATATCGAACAGCTTGTCGA---GAAAGCA 366
BSNT_00185___ 361 GAGGCGGAACAGACAGGAGCGGCCATCCTTGCTGTTCCGGTAAAAGATAC 410
.||| |.|||||.||.||||||.||||.|||||.||.|||||.||
BL03265___isp 367 AAGG------AAACAGGGGCAGCCATCGTTGCCGTTCCTGTTAAAGACAC 410
BSNT_00185___ 411 GATTAAACGCGTTCAAGATTTACAAGTCAGTGAG---------ACGATTG 451
|||.|||||||||||||| |.||||| |||||||
BL03265___isp 411 GATCAAACGCGTTCAAGA---------CGGTGAGATAGCCGGAACGATTG 451
BSNT_00185___ 452 AACGTTCAAGCTTGTGGGCTGTCCAAACGCCACAAGCTTTTCGTCTTTCT 501
|||||||||||||||||||.|..|||||.|||||||||||||||||||||
BL03265___isp 452 AACGTTCAAGCTTGTGGGCCGCTCAAACCCCACAAGCTTTTCGTCTTTCT 501
BSNT_00185___ 502 TTATTGATGAAGGCTCACGCTGAGGCCG-AGCGCAAGGGATTTT--TAGG 548
.|..|||||||.||||||..||||||.| |||..|||| ||| |.||
BL03265___isp 502 ATTCTGATGAATGCTCACCTTGAGGCTGAAGCAAAAGG---TTTCCTCGG 548
BSNT_00185___ 549 GACGGATGACGCCAGCCTCGTTGAACAGATGGAGGGCGGTTCGGTCCGTG 598
.|||||.||||||||.||.||.|| |||.|.||| .|||.|| |
BL03265___isp 549 TACGGACGACGCCAGTCTTGTCGA------GGAAGCCGG--AGGTACG-G 589
BSNT_00185___ 599 TTG------TAGAAGGCAGCTATACAAATATTAAGCTGACGACGCCAGAC 642
||| |..||||....|||..|||.||.||.||||||||.||.||.
BL03265___isp 590 TTGCAATCATTCAAGGGGATTATCAAAACATCAAACTGACGACCCCGGAT 639
BSNT_00185___ 643 GATTTGAC--GTCAGCTGAAGCTATCATGGAATCAGAAAGTGGGAATAAA 690
||.||| | ||| ||.|||||.||..|.|||.|.||||...|||||.||
BL03265___isp 640 GACTTG-CTTGTC-GCAGAAGCGATATTAGAAGCGGAAAAGAGGAATGAA 687
BSNT_00185___ 691 CATGTTTAG 699
|||||||||
BL03265___isp 688 CATGTTTAG 696
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