Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01869 and BL03254

See Amino acid alignment / Visit BSNT_01869 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:23
# Commandline: needle
#    -asequence dna-align/BSNT_01869___yitU.1.5803.seq
#    -bsequence dna-align/BL03254___yitU.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01869___yitU-BL03254___yitU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01869___yitU-BL03254___yitU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01869___yitU
# 2: BL03254___yitU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 836
# Identity:     605/836 (72.4%)
# Similarity:   605/836 (72.4%)
# Gaps:          46/836 ( 5.5%)
# Score: 2129.0
# 
#
#=======================================

BSNT_01869___      1 ATGGAGACAAAACCCTATTTAATCGCATTAGATTTAGATGGAACATTATT     50
                     ||||||||||||||.||||||||.|||||.||.|||||.||.||||||||
BL03254___yit      1 ATGGAGACAAAACCATATTTAATTGCATTGGACTTAGACGGTACATTATT     50

BSNT_01869___     51 AAAGGATGATAAAACCATATCTGAAAACACCCTTCAGACGATACAG----     96
                     |||.||.||.||.|||||.||.||||    .||.||| |||   ||    
BL03254___yit     51 AAAAGACGACAAGACCATCTCGGAAA----GCTCCAG-CGA---AGTCAT     92

BSNT_01869___     97 -CGCCTAA--------AAGATGACGGGCATTATGTCTGCATCTCAACGGG    137
                      |||  ||        |||||   ||.|||||.||.|||||.||.|||||
BL03254___yit     93 CCGC--AAGCTGCGGGAAGAT---GGACATTACGTGTGCATTTCTACGGG    137

BSNT_01869___    138 GCGTCCGTACCGTTCAAGTTCCATGTACTACCAGCAGATGGAACT-GACA    186
                     ..|.||||.|.|..||||.||||||||.||..|.|||.|..|.|| || .
BL03254___yit    138 AAGACCGTTCAGAGCAAGCTCCATGTATTATGATCAGCTCCAGCTCGA-T    186

BSNT_01869___    187 ACGCCGATTGTCAATTTTAACGGAGCATTTGTCCATCATCCGCAGGACGA    236
                     ||||||||.||||||||.|||||.||.|||||||||||.||..|.||.||
BL03254___yit    187 ACGCCGATCGTCAATTTCAACGGCGCGTTTGTCCATCACCCTAAAGATGA    236

BSNT_01869___    237 CAGCTGGGGACGGTATCATACGTCACTCCCGCTTGATGTTGTCAAACAGC    286
                     .|||||||||||.|..|||||.||.||....||.||.||.|||||||||.
BL03254___yit    237 AAGCTGGGGACGCTTCCATACATCTCTTGATCTCGAGGTGGTCAAACAGA    286

BSNT_01869___    287 TCGTGGATATCAGCGAGAGCTACAACGTACATAATGTGCTTGCTGAAGTG    336
                     ||.|.||..|||||||.|..|||||||||||||||.|.|||||||||.|.
BL03254___yit    287 TCATTGAAGTCAGCGAAACGTACAACGTACATAATATCCTTGCTGAAATT    336

BSNT_01869___    337 ATTGATGACGTATACTTTCATTACCATGATGAGCACCTGATTGATGCCTT    386
                     .|.|||||.||.||.||||||||.|||||.||..|.||||||||||.|||
BL03254___yit    337 GTCGATGATGTTTATTTTCATTATCATGACGAAAAGCTGATTGATGTCTT    386

BSNT_01869___    387 TAACATGAACACAACAAATGTAACGGTCGGAGACTTGCGGGAAAATCTTG    436
                     ||..|||..||...|.|||.|.||.||||||||.||..|...|||.||.|
BL03254___yit    387 TACGATGGGCAGCCCGAATATTACAGTCGGAGATTTAAGAACAAACCTCG    436

BSNT_01869___    437 GTGAAGATGTGACGTCTGTACTCATACATGCAAAAGAAGAGGATGTGCCG    486
                     |..|.||||||||....|||.|.||.||.|||||||||||||||||.|||
BL03254___yit    437 GCCAGGATGTGACAAGCGTATTGATTCACGCAAAAGAAGAGGATGTTCCG    486

BSNT_01869___    487 GCAATACGCTCATATTTATCGGATGTGCATGCCGAGGTAATCGACCATAG    536
                     ||.||.|||||.|||.|.||.||.||.||.||.|||.|..||||||||||
BL03254___yit    487 GCGATCCGCTCCTATCTGTCAGACGTACACGCAGAGATGGTCGACCATAG    536

BSNT_01869___    537 AAGATGGGCCGCACCGTGGCATGTCATTGAAATTATCAAAAGCGGCATGA    586
                     |||||||||.||.|||||||||||.||.|||.|.||.|||||||||||.|
BL03254___yit    537 AAGATGGGCGGCCCCGTGGCATGTAATCGAACTGATTAAAAGCGGCATCA    586

BSNT_01869___    587 ATAAAGCGGTCGGCCTGCAGAAAATCAGCGATTATTACGGCCTGCCGAGG    636
                     ||||||||||||||.|..|||||||||..||.||.|||||..|.|||...
BL03254___yit    587 ATAAAGCGGTCGGCTTAGAGAAAATCACGGACTACTACGGAATCCCGCCT    636

BSNT_01869___    637 GAGCGGATCATTGCTTTCGGGGATGAGGATAACGATTTGGAAATGCTTGA    686
                     ||||||.|||||||.|||||.|||||.||.|||||..|.|||||||||||
BL03254___yit    637 GAGCGGGTCATTGCCTTCGGCGATGAAGACAACGACCTTGAAATGCTTGA    686

BSNT_01869___    687 ATTTGCAGGCTGCGGCGTTGCAATGGGAAATGGAATTGACGCGGT--CAA    734
                     .||.|||||||||||.||.||.|||||.||.||.||.||.|.|||  .||
BL03254___yit    687 GTTCGCAGGCTGCGGAGTAGCGATGGGCAACGGCATCGAAGGGGTAAAAA    736

BSNT_01869___    735 GCAGATTGCCAAC-------CGAACAACGGCTACAAATGAAGAGGACGGC    777
                     ||  .||||.|||       |||| |.||      |||||.||.|||||.
BL03254___yit    737 GC--GTTGCAAACAAGGTCACGAA-ATCG------AATGAGGAAGACGGA    777

BSNT_01869___    778 GTTGCAAGGTTTTTGAAAGAATATTTCTCACTTTAA    813
                     .|.|||...|||||.||.||.||.|||.|..|.|||
BL03254___yit    778 ATCGCAGTCTTTTTAAAGGATTACTTCGCTTTATAA    813


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01869 and BL03254

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
