Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01894 and BL03251
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:25
# Commandline: needle
# -asequence dna-align/BSNT_01894___med.1.5803.seq
# -bsequence dna-align/BL03251___med.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01894___med-BL03251___med.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01894___med-BL03251___med.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01894___med
# 2: BL03251___med
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 994
# Identity: 685/994 (68.9%)
# Similarity: 685/994 (68.9%)
# Gaps: 80/994 ( 8.0%)
# Score: 2225.5
#
#
#=======================================
BSNT_01894___ 1 TTGAT----CACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGA 46
|| .|| |||||||||..|||.||||...|.|||||.....|.|
BL03251___med 1 ---ATGGTGTAC-AGGCTTGTCGCGATTTTTTTCATTCTCCTGGCGCTAA 46
BSNT_01894___ 47 GTGGATGTGGAAAAACTCCGTTCAAAGGAAAAATTGAGAAGGTCGGCATG 96
|.||.||.|||.||.|.|||.|.|||||.||||||||.||.|||||..||
BL03251___med 47 GCGGCTGCGGACAATCGCCGCTGAAAGGGAAAATTGAAAAAGTCGGTTTG 96
BSNT_01894___ 97 CTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAA 146
||..|.|||||||||||.|||||||..||||||||.||.|||||.|||||
BL03251___med 97 CTTGTCCCTGATACGATAAATGACCAAGTATGGGGAACCAAAGGATATAA 146
BSNT_01894___ 147 AGGATTACTGAATATACAATCCAAATACAATGTGGACGTCTATTATAAAG 196
|||||||.|.|..|||||||||...||||||||.||||||||||||||||
BL03251___med 147 AGGATTATTAAGAATACAATCCGTCTACAATGTCGACGTCTATTATAAAG 196
BSNT_01894___ 197 AAGG---CGTTAAAACAGAAGAAGATATCAT--AAAT-GCGATTGAGGAT 240
|.|| ||.|| |.||.|.|..||| |||| ||..|.||.|||
BL03251___med 197 AGGGAATCGATA------ATGACGCTGCCATTAAAATGGCTGTAGAAGAT 240
BSNT_01894___ 241 TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGC 290
|||||.||.|..||||||||.||..|||||||.||.||.||.|||||||.
BL03251___med 241 TTTCACAAAAAAGGCGTCAACCTCATCTACGGGCACGGAAGCGAATATGA 290
BSNT_01894___ 291 TGAGGTGTTTAACTTGGTCGGCGAAGATTATCCAGATATGGAATTCGTCA 340
..|.|..|||||...|.|..||.||||||||||.|||||..|.||.||
BL03251___med 291 AAAAGCCTTTAATGAGATATGCAAAGATTATCCTGATATTCATTTTGT-- 338
BSNT_01894___ 341 TTTCCAATGCGAAAGCGAAAGCTG------ATAATGTAACGAG--TGTCC 382
||| ||| |||..|||||||.| |.|||||.||.|| |.||.
BL03251___med 339 TTT--AAT--GAACTCGAAAGCCGACCACCAAAATGTGACAAGCATATCG 384
BSNT_01894___ 383 ATTTTAGCGGGGAAGCAATGGGCTTTTTTGGAGGAATGACTGCTGCCCAT 432
.||..| ||.|||||.|||||.||.||.||.||||||||.||.||||||
BL03251___med 385 CTTGAA--GGAGAAGCGATGGGGTTCTTCGGCGGAATGACGGCGGCCCAT 432
BSNT_01894___ 433 ATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAGCC 482
..|||.|||||.||..|..||||.||..|.||..|.|.||..||||||||
BL03251___med 433 CAGTCAAAAACAAAGAAAATCGGCGTGCTCGCAACGTATAAATGGCAGCC 482
BSNT_01894___ 483 TGAGGTGGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAG 532
|||.||.||.||.|||..|.|||||||.||.||.....|||||||.||.|
BL03251___med 483 TGAAGTAGAAGGATTTTCCGAAGGGGCTAAATACCTCGATCCGGACATTG 532
BSNT_01894___ 533 AGGTAAATACGAAATAT-ACGGATCATTGGGATGA---TGATACAACAGC 578
||||.|..||..||||| .||| .||.|||||.|| .|| ||..||
BL03251___med 533 AGGTGATGACAGAATATGTCGG-CCAGTGGGACGACAGCGA---AAATGC 578
BSNT_01894___ 579 AGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATC 628
.||.||.||.|||.|.|||||||||||.|.||||||||||||||||||||
BL03251___med 579 CGTCAAACTGTATGAAAAAATGAAGAAGGCAGGCGCGGATGTTGTGTATC 628
BSNT_01894___ 629 CCGCCGGAGACGGGTATAATGTCCCTGTTATTCAGCAAATCAAAAAAGAC 678
|.||||||||||||||||||||||||||.|||.|.|||||||||||.|||
BL03251___med 629 CGGCCGGAGACGGGTATAATGTCCCTGTCATTGAACAAATCAAAAAGGAC 678
BSNT_01894___ 679 GGTCTTTATGCCATTGGCTACGTCACAGATCAATCGGATCTGGGCGAGAA 728
||.||.||.||.||.|||||.||.|..||.||.|||||..||||.|||||
BL03251___med 679 GGGCTGTACGCTATCGGCTATGTAAGCGACCAGTCGGAATTGGGTGAGAA 728
BSNT_01894___ 729 TACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCA 778
|..|||.||.||.|||||..|.||..||||.||..|.||.||||||.|||
BL03251___med 729 TGTCGTTTTGACAAGCACTATACAGCATGTAGATGACGCTTATGAACTCA 778
BSNT_01894___ 779 TTGCTGAACAATTTAATAAAGGCACCCTTGAGGGCG----GCGATCATTA 824
..||.||..|.|||||||||||.||.|||.|.|||| |||.|||||
BL03251___med 779 CCGCCGACGAGTTTAATAAAGGAACGCTTAAAGGCGGCAAGCGCTCATT- 827
BSNT_01894___ 825 CTACGAC-CTGAATACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTC 873
.||| .|.||.|| ||.|||.|.||.||||||..|||||||||..|.
BL03251___med 828 ---TGACATTCAAGAC-GGCGTCATCGAAATGGGAGAATTCAGCCCTGTT 873
BSNT_01894___ 874 GTCGA-----CAAAGACTTTCAGCAAA----GAATCGCCAAGCTGATCAA 914
||||| || |||||..||| |||||| ||||||..|
BL03251___med 874 GTCGATCAGTCA-----TTTCAAGAAAAGATGAATCG----GCTGATTGA 914
BSNT_01894___ 915 AACATACAACAAAACAGGCGAGCTGCCAAA-AAAC---GAGTAA 954
...||||||.||||||..|.|.|||||||| .||| ||
BL03251___med 915 CGAATACAAAAAAACAAACAAACTGCCAAACGAACATTGA---- 954
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