Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01890 and BL03248

See Amino acid alignment / Visit BSNT_01890 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:24
# Commandline: needle
#    -asequence dna-align/BSNT_01890___yjaU.1.5803.seq
#    -bsequence dna-align/BL03248___yjaU.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01890___yjaU-BL03248___yjaU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01890___yjaU-BL03248___yjaU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01890___yjaU
# 2: BL03248___yjaU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 771
# Identity:     517/771 (67.1%)
# Similarity:   517/771 (67.1%)
# Gaps:          72/771 ( 9.3%)
# Score: 1583.5
# 
#
#=======================================

BSNT_01890___      1 ATGGGAATAACGGAAAGATACTTTCAACTGG-----GAACGGAGCATAAT     45
                     |||..||||||.|||.|.|..||||||.|||     |||.||     ||.
BL03248___yja      1 ATGAAAATAACCGAACGTTTTTTTCAAATGGATTCAGAATGG-----AAC     45

BSNT_01890___     46 GTCATTCATCTGCCCTATCGCCCGAACGGCTT--CGGCATCTTTATCTTG     93
                     ||..|||||||.||.||....||||||||.||  .||  |.||.||.||.
BL03248___yja     46 GTGGTTCATCTTCCGTACAAGCCGAACGGTTTTCTGG--TGTTCATTTTC     93

BSNT_01890___     94 GGGGACAGAACCCACTTTGTCGGACATGATTCAAGCTTTTGGCAGCAGCA    143
                     ||.|||.|.|.|||.||||||||..|.|||||.|||||.||||..|||||
BL03248___yja     94 GGCGACCGGAACCATTTTGTCGGGGAAGATTCGAGCTTCTGGCTTCAGCA    143

BSNT_01890___    144 TTATGGCAGAAATCAGCTTCT---GAGCATGTTGAGGAATGAAGGATACA    190
                     |||.||..|||||||||||||   ||||   .||||.||..||||.||.|
BL03248___yja    144 TTACGGACGAAATCAGCTTCTAACGAGC---CTGAGAAACAAAGGCTATA    190

BSNT_01890___    191 CTCTTTTTAACAGCAATCTGTTCGGAAGGCATTGGGGGGCGGAAAAAGCA    240
                     |.||..|.|||||||||.|.|||||.|||||.|||||..|.||||||||.
BL03248___yja    191 CCCTGGTAAACAGCAATTTATTCGGCAGGCACTGGGGCTCCGAAAAAGCG    240

BSNT_01890___    241 GTCACCTATGCCAAACAGCTGATACATTCTGTGCTGAAGCAGGAAATCCT    290
                     ||..|.||.||.|||||||||||.||||..|||.|.||.||.||.||..|
BL03248___yja    241 GTTGCATACGCGAAACAGCTGATTCATTACGTGTTCAAACAAGAGATATT    290

BSNT_01890___    291 CAATCCGAAGATTCATATTTTAGCAGAAGGCATGGGTGCTCTCGTGGCCG    340
                     .|||...||.||||||.|.||.||.|||||||..||.||.|||.|.||.|
BL03248___yja    291 AAATGAAAAAATTCATCTATTGGCGGAAGGCACAGGGGCCCTCATTGCAG    340

BSNT_01890___    341 ATGAACTGCTTCGTTTTTCCCCGGATCATATCCGCTCAGCCGCAATGTTG    390
                     ||||.||.|||||.|....||||.|.||.||.||.||..|.||.|||.|.
BL03248___yja    341 ATGAGCTCCTTCGCTCAATCCCGAACCAAATACGTTCTACAGCGATGGTT    390

BSNT_01890___    391 AATCCTTGTCTCGATCTTCAGGCACATTATGAATCG-GAAAAAGAAAATA    439
                     ||||||||.||||||||||||||.|||.|| ||.|| |||||||||||.|
BL03248___yja    391 AATCCTTGCCTCGATCTTCAGGCTCATCAT-AAACGAGAAAAAGAAAACA    439

BSNT_01890___    440 AATTTTTCTATAAGCAATTTTTGAAAGAAGTTTCGAAAAGCTACGGAATT    489
                     |.||||||||.||.||.|||.|.||||||.||.|..||||||||||||||
BL03248___yja    440 AGTTTTTCTACAAACAGTTTATTAAAGAAATTGCCGAAAGCTACGGAATT    489

BSNT_01890___    490 TCTGAAAAAGAAGCGGAAG-----CGCTT---CGTTATAAAACA-AT---    527
                            |.|.|||||.||     ||.||   ||||..|||.|| ||   
BL03248___yja    490 -------ACGGAGCGGGAGGCAGCCGATTATCCGTTCAAAAGCATATCCC    532

BSNT_01890___    528 ----TCA-AAGCTACCCGAGCGGCGTACCGGTTCATATATGGCAGCGTAT    572
                         ||| ||.||          ||||||.||||||||.|||||..|..|
BL03248___yja    533 CTTATCACAATCT----------CGTACCCGTTCATATTTGGCAAAGACT    572

BSNT_01890___    573 GACCGGAGCTCCATATCCCTACAGCGTACATGCGGAA--GTTTTCAAGGA    620
                     ||.|||..|.||.|||||.||.|...|.|||||..||  ||||  .||||
BL03248___yja    573 GAACGGGTCACCGTATCCGTATATGATCCATGCCAAAACGTTT--GAGGA    620

BSNT_01890___    621 AAAACAGCAAAAGCAAGGC--TCACCG-GTCGACATGACATTTCATTTAT    667
                     ....||||..|   |||||  ||||.| ||.|...|.||..|.||..|.|
BL03248___yja    621 GCGCCAGCTTA---AAGGCCGTCACAGCGTGGGGCTTACCCTGCACCTGT    667

BSNT_01890___    668 TTGAGCATCC-AAGCAGAATTTATGCATCAATTTGCAAATTCTTTCACA-    715
                     ..||.||||| .||| |.|||.||.||.||| |.||.||.|.|||||.| 
BL03248___yja    668 CCGAACATCCTCAGC-GCATTCATTCAGCAA-TCGCGAACTTTTTCAAAA    715

BSNT_01890___    716 -GTCATGAAAAAGAATTATAG    735
                      | ||||||||||..||||||
BL03248___yja    716 CG-CATGAAAAAGTCTTATAG    735


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