Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01884 and BL03246
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:24
# Commandline: needle
# -asequence dna-align/BSNT_01884___carB.1.5803.seq
# -bsequence dna-align/BL03246___carB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01884___carB-BL03246___carB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01884___carB-BL03246___carB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01884___carB
# 2: BL03246___carB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3219
# Identity: 2330/3219 (72.4%)
# Similarity: 2330/3219 (72.4%)
# Gaps: 255/3219 ( 7.9%)
# Score: 8274.0
#
#
#=======================================
BSNT_01884___ 1 ATGCCTAAAGAC---ACCAGTATTTC--AAGCATATTAGTAATCGGATCA 45
|||||||||||| |||| || ||||||..|.||.||||||||.
BL03246___car 1 ATGCCTAAAGACCAAACCA-----TCAAAAGCATTCTCGTTATCGGATCG 45
BSNT_01884___ 46 GGCCCGATCATCATCGGGCAGGCGGCAGAATTTGATTATTCAGGAACTCA 95
||.|||||.||||||||||||||.||.|||||.||.||.||||||||.||
BL03246___car 46 GGGCCGATTATCATCGGGCAGGCCGCTGAATTCGACTACTCAGGAACCCA 95
BSNT_01884___ 96 AGGGTGCATCGCGCTGAAGGAG-GAGGGCTACCGGGTGATTCTCGTCAAC 144
|||.|||||.|||||||| .|| ||.||||||||||||||||||||||||
BL03246___car 96 AGGCTGCATGGCGCTGAA-AAGCGAAGGCTACCGGGTGATTCTCGTCAAC 144
BSNT_01884___ 145 AGCAATCCGGCGACAATTATGACCGATGAAGCCTTTGCTGATGAGATTTA 194
|||||.|||||||||||.||||||||||||.|.|||||.|||||.||.||
BL03246___car 145 AGCAACCCGGCGACAATCATGACCGATGAATCTTTTGCAGATGAAATCTA 194
BSNT_01884___ 195 TTTTGAGCCTCTGACAGCAGAAAGCCTGACAGCCATCATTAAGAAAGAAC 244
|||||||||..||||||..||||||||.|||...|||||.|||...|||.
BL03246___car 195 TTTTGAGCCGTTGACAGTGGAAAGCCTCACACAAATCATCAAGCGCGAAA 244
BSNT_01884___ 245 AGCCTGATGGGCTTCTTGCCAATTTAGGCGGTCAGACCGCGTTGAATTTA 294
|.||.|||||.||.||.||||||.|.|||||.|||||.|||.|||||||.
BL03246___car 245 AACCGGATGGACTGCTCGCCAATCTGGGCGGACAGACAGCGCTGAATTTG 294
BSNT_01884___ 295 GCAGTGGAGCTTGAAGAAACGGGTGTTTTAAAGGAGCACGGCGTCAAGCT 344
||.||.|||||||||.|..|.||..||.|.||.|.|.||||.||.|||||
BL03246___car 295 GCTGTCGAGCTTGAAAAGGCCGGCATTCTGAAAGCGTACGGGGTGAAGCT 344
BSNT_01884___ 345 TCTCGGCACATCCGTTGAAACGATACAAAAAGGAGAAGACCGGGAAAAAT 394
.||.||.|||||.||.||.|||||..||||.||.||||||.|.|||||.|
BL03246___car 345 GCTTGGAACATCTGTCGATACGATCGAAAAGGGTGAAGACAGAGAAAAGT 394
BSNT_01884___ 395 TCCGTTCGTTAATGAACGAATTGAATCAGCCCGTGCCAGAGAGTGAAATT 444
||||..|.||.|||||.||..|||||.|.||.|||||.||....|||||.
BL03246___car 395 TCCGCGCCTTGATGAAAGAGCTGAATGAACCTGTGCCGGATTCAGAAATC 444
BSNT_01884___ 445 GTTGATAATGAAACCGACGCCATCCGGTTTGCGGAATCCATCGGTTTTCC 494
|||||.|||.|....||.||..|.||.||||||...||.|||||||||||
BL03246___car 445 GTTGACAATCAGGATGATGCGCTTCGTTTTGCGCTCTCAATCGGTTTTCC 494
BSNT_01884___ 495 CGTTATTATCAGACCTGCTTACACATTAGGCGGAAAGGGCGGAGGAATCG 544
..||||..|..|.||.||.||.|||.|.||||||||.||.||.||.||||
BL03246___car 495 GATTATCGTGCGGCCGGCCTATACACTGGGCGGAAAAGGAGGCGGCATCG 544
BSNT_01884___ 545 CCCCTGATAAAGAA---------GCCTTTACAGCTATGATTAAACAG-GC 584
|..| ||.|||..| ||||||| ||..|| || ||
BL03246___car 545 CGGC-GACAAAAGAGGAGTTTCTGCCTTTA--------ATCGAA-AGCGC 584
BSNT_01884___ 585 GCTATTAGCAAGCCCGATCAATCAATGCCTTGTCGAAAAAAGCATTGCAG 634
.||..|.|||||.||||||.||||||||||||||||||||||||||||.|
BL03246___car 585 CCTCCTCGCAAGTCCGATCCATCAATGCCTTGTCGAAAAAAGCATTGCCG 634
BSNT_01884___ 635 GCTTTAAAGAGATTGAATATGAAGTCATGCGTGACAGCAATAACACATGC 684
|.||||||||.||.|||||.|||||||||||.|||||.||.||.||||||
BL03246___car 635 GTTTTAAAGAAATCGAATACGAAGTCATGCGGGACAGTAACAATACATGC 684
BSNT_01884___ 685 ATTACCGTCTGCAACATGGAAAATATCGATCCGGTCGGCGTGCATACAGG 734
||.|||||||||||.||||||||.||||||||.||||||||.|||||.||
BL03246___car 685 ATCACCGTCTGCAATATGGAAAACATCGATCCTGTCGGCGTCCATACGGG 734
BSNT_01884___ 735 TGACTCTATCGTTGTGGCGCCTTCACAAACATTGACAGATGAAGACTATC 784
.||.||.||||||||.||.||.||.||.|||||.||.||||..||.||||
BL03246___car 735 AGATTCGATCGTTGTCGCCCCGTCGCAGACATTAACGGATGCGGATTATC 784
BSNT_01884___ 785 AAATGCTGCGGACGGCTAGTCTGACCATCATTTCAGCACTTGATGTCGTA 834
||||||||||..|.||.||..|.|..||||||||.||.||.||||||||.
BL03246___car 785 AAATGCTGCGTTCTGCCAGCTTAAAAATCATTTCCGCGCTCGATGTCGTC 834
BSNT_01884___ 835 GGCGGCTGCAATATTCAATTCGCGCTT-GATCCTTTCAGCAAGCAATATT 883
|||||||||||.||||||||||| ||| ||.||....|||||..|.||||
BL03246___car 835 GGCGGCTGCAACATTCAATTCGC-CTTGGACCCGGAGAGCAAAAACTATT 883
BSNT_01884___ 884 ACGTGATCGAAGTGAATCCGCGTGTCAGCCGGTCATCGGCTCTCGCATCT 933
|.||.|||||.||.||||||.|.||.|||||.|||||.||.|||||.||.
BL03246___car 884 ATGTCATCGAGGTCAATCCGAGAGTAAGCCGTTCATCAGCCCTCGCCTCA 933
BSNT_01884___ 934 AAAGCGACCGGTTATCCGATTGCAAAGATGGCTGCTAAACTGGCAGTCGG 983
|||||.|||||.||||||||.|||||.|||||.||.||||||||.|||||
BL03246___car 934 AAAGCAACCGGCTATCCGATCGCAAAAATGGCGGCAAAACTGGCTGTCGG 983
BSNT_01884___ 984 ATACACACTTGACGAGCTGAAAAATCCGCTCACAGGCTCAACTTACGCAA 1033
.|||||.||||.|||||||||||||||||||||||..||.||.||.||||
BL03246___car 984 CTACACGCTTGCCGAGCTGAAAAATCCGCTCACAGATTCGACCTATGCAA 1033
BSNT_01884___ 1034 GCTTTGAACCGGCACTGGACTATGTGATCGTCAAATTTCCGCGCTGGCCG 1083
||||.||.||.||.||.||||||||..|||||||||||||||||||||||
BL03246___car 1034 GCTTCGAGCCTGCGCTTGACTATGTCGTCGTCAAATTTCCGCGCTGGCCG 1083
BSNT_01884___ 1084 TTTGATAAATTCAAAAACGCAGACCGCAAGCTTGGCACAAAAATGAAAGC 1133
||.||.|||||||||.|.||.|||||||||||.|||||.|||||||||||
BL03246___car 1084 TTCGACAAATTCAAACAAGCCGACCGCAAGCTCGGCACGAAAATGAAAGC 1133
BSNT_01884___ 1134 CACCGGTGAAGTGATGGCGATTGAACGGAATTTAGAAGCAGCGATACAAA 1183
.||.||.|||||.|||||||||||.||.|||.|.|||||.||..|.||||
BL03246___car 1134 GACAGGGGAAGTCATGGCGATTGACCGCAATCTTGAAGCGGCCCTGCAAA 1183
BSNT_01884___ 1184 AGGCAGCCGCGTCGCTTGAATTAAAAAATATCGGGACACACCTT--CCAG 1231
|.||.|.|||.||.|||||..| .||||.|||.||| ||||.|| ||.|
BL03246___car 1184 AAGCGGTCGCCTCCCTTGAGCT-GAAAACATCAGGA-ACACATTTGCCCG 1231
BSNT_01884___ 1232 AGCTCAGCGGGTTGTCAATTGATACGCTATGGGATTTGGCAATC-----A 1276
|.||..||||..|.||...|||...|||.|||.|..|| | |
BL03246___car 1232 AACTTGGCGGCGTATCTTCTGAAGTGCTGTGGAAGCTG-----CTTGAGA 1276
BSNT_01884___ 1277 CTCCGGATGACCGCAGATTTTTCGTTGTCATGGAGCTGTTGAGCCG---- 1322
|.||.|||||||||.|.||.||.|..||.|||||.|||.|||||.|
BL03246___car 1277 CCCCTGATGACCGCCGTTTCTTTGCGGTTATGGAACTGCTGAGCAGGGGG 1326
BSNT_01884___ 1323 --------CAGCGTCTCGATTGATGACATCCATGAAAAAACAAAAATTGA 1364
|||| ||.||.||.||.|||||.|||||.||
BL03246___car 1327 ACTTCCATCAGC------------GAAATACACGAGAAAACGAAAATCGA 1364
BSNT_01884___ 1365 TCCGTTTTTCCTTCATACCTTTGACAACATCATCAAATTGGAAAAC-CGC 1413
|...|.||||||||||...|||...||||||||..|..|||||||| ||
BL03246___car 1365 TGATTATTTCCTTCATGTGTTTTCTAACATCATTCAGCTGGAAAACACG- 1413
BSNT_01884___ 1414 CTGATGGAAGCAGGGAG---CGATCTC------TCTTTTGAATTATTGAA 1454
||||||| ||||||||| ||.|.|| .||||||||
BL03246___car 1414 CTGATGG-AGCAGGGAGACTCGTTGTCCGTCAGCCTTTTGAA-------- 1454
BSNT_01884___ 1455 GAAAG--CAAAGGAAAAGGGATTCTCAGACGCAACGATTGCCTCACTGAT 1502
|||| .||| |||||||||||..|.|||...|||||.||.||.||.|.
BL03246___car 1455 -AAAGGTGAAA-GAAAAGGGATTTACCGACTTTACGATCGCTTCCCTCAC 1502
BSNT_01884___ 1503 CGGCAAAACAGAGGAAGAGGTGCGCGCGCTTCGCAAGGAGATGGGCATTA 1552
|||.||.|||||.|||||.||||||||||||||||||.|.|||||||||.
BL03246___car 1503 CGGAAAGACAGAAGAAGAAGTGCGCGCGCTTCGCAAGAAAATGGGCATTG 1552
BSNT_01884___ 1553 CGCCTTCCTTTAAAATCGTAGATACATGCGCGGCAGAGTTTGATGCGAAA 1602
|..|.||||||||||||||.||||||||||||||.||.|||||||||||.
BL03246___car 1553 CCGCATCCTTTAAAATCGTCGATACATGCGCGGCTGAATTTGATGCGAAG 1602
BSNT_01884___ 1603 ACAAACTATTTTTACTCCACATATTTCGGAGAAACCGATGGAGACATCAG 1652
|||||||||||||||||.||.||.|||||..|||.|||.|||||||||
BL03246___car 1603 ACAAACTATTTTTACTCAACGTACTTCGGGAAAAGCGACGGAGACATC-- 1650
BSNT_01884___ 1653 CCGCAAAGA--GAAAAAACGCGCGCTCATTATCGGATCAGGCCCGATTCG 1700
.|.||||.| ||||||.||.||..|.||.|||||.||.|||||||||||
BL03246___car 1651 TCTCAAAAAACGAAAAAGCGGGCCTTGATCATCGGTTCCGGCCCGATTCG 1700
BSNT_01884___ 1701 GATCGGCCAAGGCGTTGAATTTGATAATAGTGCTGTTCACGGTGTGCTGA 1750
|||||||||.||.||.||.|||||..|.||.||.||.|||||.||..|||
BL03246___car 1701 GATCGGCCAGGGGGTCGAGTTTGACTACAGCGCCGTGCACGGCGTCATGA 1750
BSNT_01884___ 1751 CACTGCAAGAG-CTTGGATTCGAAACCATCATGATTAACAATAACCCGGA 1799
|.||| ||.|| ||.|||||.|||||.||||||.|.|||||.||.|||||
BL03246___car 1751 CGCTG-AAAAGCCTCGGATTTGAAACGATCATGCTGAACAACAATCCGGA 1799
BSNT_01884___ 1800 AACGGTCAGCACCGATTATGAAATTGCGGACCGCCTGTATTTTGAACCAA 1849
|||.||||||||.|||||||||||.||||||||||||||.||||||||.|
BL03246___car 1800 AACCGTCAGCACGGATTATGAAATGGCGGACCGCCTGTACTTTGAACCGA 1849
BSNT_01884___ 1850 TGACAACGGAGCATATTGTAAACGTGGC-GGAGCAGGAAAATATTGATTT 1898
|.|||.|.|||||||||.|.||.||.|| |.||| ||||.|.||.||.||
BL03246___car 1850 TTACACCCGAGCATATTCTCAATGTCGCTGAAGC-GGAAGACATCGACTT 1898
BSNT_01884___ 1899 TGCAATTGTGCAATTCGGCGGCCAAACTGCAATCAATGCTGCTGAAGCGC 1948
|||.|||||||||||||||||||||.|.||.|||||||..||..|||||.
BL03246___car 1899 TGCGATTGTGCAATTCGGCGGCCAATCCGCCATCAATGTAGCGCAAGCGA 1948
BSNT_01884___ 1949 TCGAAAAAGCCGGCATTACTCTTCTTGGCACATCATTTCAAACGCTCGAC 1998
|.||||||||.|||||.||.||.|||||.|||||||...||||.||.|||
BL03246___car 1949 TTGAAAAAGCGGGCATCACCCTGCTTGGGACATCATCGGAAACCCTTGAC 1998
BSNT_01884___ 1999 GTGTTAGAGGATCGGGATCAATTCTATCAGCTTCTTGACGAGCTGGGATT 2048
.|..|.||.||.||.||||||||.||||||||.|||||||||||.||..|
BL03246___car 1999 ATACTTGAAGACCGCGATCAATTTTATCAGCTGCTTGACGAGCTCGGCAT 2048
BSNT_01884___ 2049 GAAGCACGCAAAAGGAGAAATTGCTT-ATACAAAAGAAGAAGCCGCTTCA 2097
....||.||.||||||||||..|||| || ||||||..|||||.|....|
BL03246___car 2049 CTCCCATGCCAAAGGAGAAACGGCTTCAT-CAAAAGCGGAAGCGGTGAAA 2097
BSNT_01884___ 2098 AAAGCGAGTGAGATCGGCTATCCGGTGTTAATCCGCCCATCTTACGTTAT 2147
|||||||..||.|||||||||||.|||||.|||.|.||.||.|||||.||
BL03246___car 2098 AAAGCGAACGAAATCGGCTATCCTGTGTTGATCAGGCCGTCATACGTGAT 2147
BSNT_01884___ 2148 CGGCGGAATGGGCATGATCATTGTTGACTCGCAAGCCCAGCTTTCTC--- 2194
||||||||||||||||||.||.|||.||||..||||..|| |||
BL03246___car 2148 CGGCGGAATGGGCATGATGATCGTTCACTCAGAAGCGGAG----CTCAGA 2193
BSNT_01884___ 2195 -AGCTGCTGAATGATGAGGACAGC----ATGCCATATCCGATTTTGATTG 2239
||||||||...| ||.||.| |||||.||.||||||.||||.|
BL03246___car 2194 GAGCTGCTGGGCG----GGGCATCGCAAATGCCTTACCCGATTCTGATCG 2239
BSNT_01884___ 2240 ATCAATATGTGTCTGGAAAGGAAGTCGAAATTGA-TTTGATTTC--CGAC 2286
|||||||.||.||.|||||.||..|.|||||.|| .||| || |||.
BL03246___car 2240 ATCAATACGTATCAGGAAAAGAGTTTGAAATCGACCTTG---TCAGCGAT 2286
BSNT_01884___ 2287 GGCGAGGATGTCTTTATCCCGACATATACCGAGCATATTGAA----CGGG 2332
||||..|||.|||..||||||||.||||.||||||||||||| ||||
BL03246___car 2287 GGCGGCGATCTCTACATCCCGACTTATATCGAGCATATTGAAAAAGCGGG 2336
BSNT_01884___ 2333 CAGGTGTCCATTCAGGGGACAGCTTTGCCATTCTTCCCGGGCCGTCCATC 2382
| ||.||||||||.|||||||..||.|||.|.||.|||||.||..|.
BL03246___car 2337 C----GTGCATTCAGGTGACAGCTACGCGATTTTGCCGGGGCCTTCGGTT 2382
BSNT_01884___ 2383 AC----GAGCGGGCTGCAGCAGGGCATGAAA------------GATGCGG 2416
|| ||| |||||| |||||.|
BL03246___car 2383 ACTCCGGAG----------------ATGAAAAGCGCCGCTCGGGATGCTG 2416
BSNT_01884___ 2417 CACAAAAAATTGCCCGAAAACTTTCATTTAAAGGCATCATGAACATTCAA 2466
|...||||||.|.|||.||.||...||||||||||||.||||||||||||
BL03246___car 2417 CCGCAAAAATCGTCCGCAAGCTCGGATTTAAAGGCATTATGAACATTCAA 2466
BSNT_01884___ 2467 TTTGT----GA-TCGACAATGGAAACATACTCGTTCTTGAAGTGAATCCG 2511
|||.| || ||| .||| |..|.|||.|.||||||||.||||||
BL03246___car 2467 TTTATAGCGGATTCG--GATG---AGCTGCTCATCCTTGAAGTCAATCCG 2511
BSNT_01884___ 2512 AGAGCGAGCCGCACGGTTCCTGTCGTCAGCAAAGTAATGGGCGTTCCGAT 2561
||.||||||||.||||||||.||.||||||||.||.|||||.||||||||
BL03246___car 2512 AGGGCGAGCCGGACGGTTCCGGTTGTCAGCAAGGTGATGGGAGTTCCGAT 2561
BSNT_01884___ 2562 GATTCCGCTCGCCACACGTCTGCTGGCGGGAGCGTCCTTAAAAGATCTAG 2611
|||.|||||.||..|....|||.|.||.||..||||..|.|||||.||..
BL03246___car 2562 GATCCCGCTTGCGGCGAAACTGTTAGCCGGTTCGTCACTCAAAGAACTGA 2611
BSNT_01884___ 2612 ATCCGGCAGTTCAAAATCATCA--TGGAGTTGCCGTGAAGTTCCCTGTTT 2659
|.||.||.|...||||| ||| .||.||||||||||||||.||.||.|
BL03246___car 2612 AGCCCGCCGCCAAAAAT--TCACGCGGCGTTGCCGTGAAGTTTCCGGTCT 2659
BSNT_01884___ 2660 TTTCTTCTCATGCGATCCAGGATGTGGATATCAAGCTTGGGCCGGAAATG 2709
||||.||.||.||.||.||.|||||.|||.|.||||||||||||||||||
BL03246___car 2660 TTTCATCGCACGCCATTCAAGATGTCGATTTGAAGCTTGGGCCGGAAATG 2709
BSNT_01884___ 2710 AAATCAACGGGAGAAGGCATGTGTGTCGCATATGATTCTA-----ACAGC 2754
|||||.||.||.||||||||||.||||| |.|||.| |.|||
BL03246___car 2710 AAATCGACCGGTGAAGGCATGTATGTCG-----GCTTCAATCCGGAAAGC 2754
BSNT_01884___ 2755 GCCTTGAAAAAAATCTATACAAGAGTCTGGAGTCAA---AAAGGAAGCAT 2801
|||.||||.|||||||.|.||.||.||||| ||| |||||..||||
BL03246___car 2755 GCCCTGAAGAAAATCTTTGCAGGAATCTGG---CAAACGAAAGGCTGCAT 2801
BSNT_01884___ 2802 TTATTTGCAAAACGTTCCGGAAGATGTGCAGGAG-----------TTAGC 2840
|||..| ||||| |.||.||.| .|.||
BL03246___car 2802 TTACAT------------GGAAG--GAGCCGGCGAGCTCCGTTCTCTCGC 2837
BSNT_01884___ 2841 AGAAAACGCAGGTTTTACCGTTCATGAAG--GGAC-ATTTGCCTCATGGA 2887
||||.|.||.||.||.|||||.| || |||| |||| ||..||.
BL03246___car 2838 AGAACAGGCGGGCTTCACCGTAC----AGTCGGACGATTT---TCCGGGC 2880
BSNT_01884___ 2888 TGGAACAA---GAA-GAAAAATCGCTCCACATCAATCTGAG-CGGTTCTG 2932
||||.||| ||| ||.|||.||||.||||||.|| |.|| ||..||..
BL03246___car 2881 TGGATCAAACGGAAGGACAAAGCGCTGCACATCCAT-TTAGCCGAGTCAA 2929
BSNT_01884___ 2933 AAGA----AGCACGCATAGAACGTTTGGAAGCCATGACGCACGGCATCCC 2978
|||| ||.|.|||.||.| |.||||||.|.||.||||||.|..|
BL03246___car 2930 AAGAGGCGAGAAAGCAGAGGA----TAGAAGCCGTCACTCACGGCGTGGC 2975
BSNT_01884___ 2979 CGTCTTTACAGAAGAAGAAACTGTGCGGGCGTTTTT-ACAAAGCGGTTCT 3027
.||..|.||.||||||||.||.||||||||.||||| || .|||||...|
BL03246___car 2976 GGTGATGACGGAAGAAGAGACGGTGCGGGCATTTTTGAC-GAGCGGGCAT 3024
BSNT_01884___ 3028 GGCCATCCGC---AGCCTGTATCTCTCAAAGACCTCTATAAAAAGGAAGT 3074
|| |.|..| |||| ||.||.||.|||||..|.||||||||||||||
BL03246___car 3025 GG--AACGACTAAAGCC-GTGTCGCTTAAAGATTTATATAAAAAGGAAGT 3071
BSNT_01884___ 3075 GGCATCATGCACACAGTGA 3093
||...||||...||.||.|
BL03246___car 3072 GGAGACATGTCTACTGTAA 3090
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