Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01881 and BL03243

See Amino acid alignment / Visit BSNT_01881 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:23
# Commandline: needle
#    -asequence dna-align/BSNT_01881___argB.1.5803.seq
#    -bsequence dna-align/BL03243___argB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01881___argB-BL03243___argB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01881___argB-BL03243___argB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01881___argB
# 2: BL03243___argB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 821
# Identity:     564/821 (68.7%)
# Similarity:   564/821 (68.7%)
# Gaps:          88/821 (10.7%)
# Score: 1767.5
# 
#
#=======================================

BSNT_01881___      1 ATGAAGAAAACAATCGTTTTTAAATGCGGGGGAAGCGTCATCCGTGAGCT     50
                     |||...|||||||||||||||||||||||.||||||||||||||.||.||
BL03243___arg      1 ATGGGTAAAACAATCGTTTTTAAATGCGGCGGAAGCGTCATCCGCGAACT     50

BSNT_01881___     51 GTCGGAGGAATTTTTTCAAAATCTGAAAGAGCTGA-TG---GCGTCAGGC     96
                     .|||||.||||||||||||||.||||||||.|||| ||   ||    |||
BL03243___arg     51 CTCGGACGAATTTTTTCAAAACCTGAAAGATCTGACTGAAAGC----GGC     96

BSNT_01881___     97 TGGAAGCTGGCGATCGTACATGGCGGGGGACCGGAAATCACGAATATGCT    146
                     |||||..|.|||.||||.||.||.||.|||||.||.||.||.||.|||||
BL03243___arg     97 TGGAAAATCGCGCTCGTGCACGGGGGTGGACCCGATATTACAAAGATGCT    146

BSNT_01881___    147 GAAACGGTTAAATA-TCAAGACAGAGTTTTCG--GGCGGACAGAGGAAAA    193
                     |||...|.|.|||| ||.| ||.||  .||||  ..|||||||.|.||.|
BL03243___arg    147 GAAGAAGCTCAATATTCGA-ACCGA--ATTCGTCAACGGACAGCGCAAGA    193

BSNT_01881___    194 CAACGAAGCCGGTGCTGGAAGTGGCGGAAATGGTTTTATCCGGTTCTGTC    243
                     |.||.||..||||.||.|||||.||.||||||||..|.||||||||..||
BL03243___arg    194 CGACAAAAGCGGTTCTTGAAGTCGCTGAAATGGTCCTGTCCGGTTCGATC    243

BSNT_01881___    244 AATAAATTTTTCGTTGCTGAGCTTGCCAAA-CACGGACTGCGAGCCGCAG    292
                     ||.||||||||||||||||||| ||.|||| |||||.||.|..||.|..|
BL03243___arg    244 AACAAATTTTTCGTTGCTGAGC-TGACAAAGCACGGGCTTCCGGCTGTCG    292

BSNT_01881___    293 GCATTTCTGGTAAGGATGGAGG-----TCTTTTGGAGGCTGATTATCTAG    337
                     ||.|.||.||.||.||.||.||     ||.||     ||.||.|||.||.
BL03243___arg    293 GCGTATCGGGAAAAGACGGGGGACTGCTCCTT-----GCAGACTATTTAA    337

BSNT_01881___    338 ATCCGGAAA---CACACGGAGAAGT-GGGAGAAATCAAAAAAGTCGATGC    383
                     ||   ||||   .|.||||..|||| |||.| .||.||||||||  |..|
BL03243___arg    338 AT---GAAAAGGAATACGGTCAAGTCGGGCG-CATTAAAAAAGT--AAAC    381

BSNT_01881___    384 GTCC--ATGG-TGAACGCGCTGATGGAAAATGGCATCATCCCAGTTATTG    430
                     |.||  |||| .||| |||||.||||||||.||..|.||.||.|||||.|
BL03243___arg    382 GGCCAAATGGCCGAA-GCGCTCATGGAAAAAGGATTTATTCCGGTTATCG    430

BSNT_01881___    431 CGCCGCTGTCTATGACAAGCGACTGCAAAACGCTGAATGTAAATGCTGAT    480
                     |.||.||.||.|||||....|.|||..|.||..|||||||.||.||.|||
BL03243___arg    431 CACCCCTCTCGATGACGGATGGCTGTGAGACCTTGAATGTGAACGCCGAT    480

BSNT_01881___    481 CTGGCTGCTTCAGCAGTCGCCGGAGCGCTTG-AAGCTGATAAGCTGATGT    529
                     .||||.||.||.||.||.||.|.||| |||| ..|||||.||..||||||
BL03243___arg    481 TTGGCGGCGTCGGCTGTTGCGGCAGC-CTTGCGCGCTGACAAATTGATGT    529

BSNT_01881___    530 TCGTCACGGATGTCGATGGAATCATGA------AGGAAAAGCAGCGTCTG    573
                     |.||.||.||||||.|.|||||.||||      |.||||.|      |||
BL03243___arg    530 TTGTGACAGATGTCAAAGGAATTATGAAAAACGAAGAAATG------CTG    573

BSNT_01881___    574 GACGTCCTGAC-CCCTAAG-----GAGATTCAGA-TGCTGATCAAGCAGG    616
                     .|.|..||||| |||.|||     ||.|..|.|| ||||||      |||
BL03243___arg    574 AAAGAGCTGACGCCCGAAGACATCGAAAGCCTGATTGCTGA------AGG    617

BSNT_01881___    617 AAGTGATCACAGGAGGGATGATCCCGAAGGTCAATTCAGCCTTGTCA---    663
                      .||||||.|.|||||.|||||.||.||.||..||||.|      ||   
BL03243___arg    618 -CGTGATCTCGGGAGGCATGATACCAAAAGTGCATTCCG------CAAAA    660

BSNT_01881___    664 ---GCT-TTATCAGATCAGGTGTCTGAAGTCATGATCGTAAACGGAAAAG    709
                        ||| ||| |||||.|.|||...|||||.||||||||||.|||.||||
BL03243___arg    661 GAGGCTCTTA-CAGATGAAGTGGAAGAAGTAATGATCGTAAGCGGGAAAG    709

BSNT_01881___    710 GATCATTCTT--CGCAGAACAAACCTTTCA-GGGGACAAAAATCGTCAAA    756
                     ||||.|||.|  ||.|..||.|   ||||| .||.||.||||||.|||||
BL03243___arg    710 GATCTTTCCTGACGAAAGACGA---TTTCATCGGCACGAAAATCATCAAA    756

BSNT_01881___    757 GCAAAGGAGGCTGTTTCATGA    777
                     ..|||||||||.||.||.|||
BL03243___arg    757 CAAAAGGAGGCCGTATCGTGA    777


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01881 and BL03243

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
