Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01870 and BL03239
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:23
# Commandline: needle
# -asequence dna-align/BSNT_01870___yitV.1.5803.seq
# -bsequence dna-align/BL03239___yitV.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01870___yitV-BL03239___yitV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01870___yitV-BL03239___yitV.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01870___yitV
# 2: BL03239___yitV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 841
# Identity: 527/841 (62.7%)
# Similarity: 527/841 (62.7%)
# Gaps: 146/841 (17.4%)
# Score: 1548.0
#
#
#=======================================
BSNT_01870___ 1 GTGATACA-AATTGAGAA----------TCAAACCGTTTCCGGTATTCCG 39
||||| || |||.||.|| |||||| |||||.
BL03239___yit 1 GTGAT-CATAATCGAAAAGCAGCATATTTCAAAC----------ATTCCT 39
BSNT_01870___ 40 TTTTTACATATTGTAAAGGAAGAG----AACAGGCACCGCGCTGTTCCTC 85
.||||.|||||||||||.||.||| ||.||..| |||.||||||
BL03239___yit 40 CTTTTGCATATTGTAAAAGAGGAGAAAAAAGAGAAA----GCTCTTCCTC 85
BSNT_01870___ 86 TCGTGATCTTTATCCATGGTTTTACAAGCGCGAAGGAACACAATCTTCAT 135
|.||..||||.||.|||||||||||||||||.||.||.||.||.|||||.
BL03239___yit 86 TTGTTTTCTTCATACATGGTTTTACAAGCGCAAAAGAGCATAACCTTCAC 135
BSNT_01870___ 136 ATTGCTTATCTGCTTGCGGAGAAGGGTTTTAGAGC-CG---TTCTGCCGG 181
.|.||.||.||||||||.||.||.|| |..|| || |||||||.|
BL03239___yit 136 TTCGCATACCTGCTTGCCGAAAAAGG----AATGCGCGTGATTCTGCCCG 181
BSNT_01870___ 182 AGGCTTTGCACCATGGGGAACGGGGAGAAGAAATG----GCTGTC----G 223
|||||.|..|.||.||||| |||.|||| |||..| |
BL03239___yit 182 AGGCTCTCTATCACGGGGA--------AAGGAATGAACAGCTCACCCAGG 223
BSNT_01870___ 224 AAGAGCTGGCGGGGCATTTTTGGGATATCGTCCTTAACGAGATTGAAGAG 273
|||||||.||...|...||||||||.||||||...||.||.||..|||||
BL03239___yit 224 AAGAGCTCGCCCCGAGATTTTGGGAGATCGTCACGAATGAAATCAAAGAG 273
BSNT_01870___ 274 ATCGGCGTACTTAAAAACCTTTTTGA-----AAAAGAGGGCCTGATAGAC 318
.|.|..||.||.|||||||..||||| |||| |.||||.||.
BL03239___yit 274 CTGGAAGTGCTGAAAAACCACTTTGAACGGGAAAA-----CATGATTGAA 318
BSNT_01870___ 319 GGCGGCCGCATCGGTCTCGCAGGCACGTCAATGGGCGGCATCACAACGCT 368
...|||||||||||...|||.||.||.||.|||||||||||....|||||
BL03239___yit 319 AAGGGCCGCATCGGCGCCGCCGGAACATCGATGGGCGGCATTGTCACGCT 368
BSNT_01870___ 369 TGGCGCTTTGACTGCATATGATTGGATAAAAGCCGGCGTCAGCCTGATGG 418
.||||||||||||..|||.||.|||||.|.|.|.|.||||||..|.||||
BL03239___yit 369 CGGCGCTTTGACTCAATACGAATGGATTACAACTGCCGTCAGTTTAATGG 418
BSNT_01870___ 419 GAAG-CCCGAATTACGTGGAACTGTTTCAGCAGCAGATTGACCA--TATT 465
|.|| |||| ..||.||.|||.|.|||.|.||||||.|.| || |||.
BL03239___yit 419 GCAGTCCCG-CCTATGTAGAATTTTTTGATCAGCAGCTCG--CATTTATG 465
BSNT_01870___ 466 C----AATCTCAGGGCATTGAAATTGATGTGCCGGAAGA-------GAAG 504
| || ||...||||||.||..|.|..|.||||| ||
BL03239___yit 466 CGTGAAA----AGAAAATTGAACTTCCTATCACAGAAGAACAAATCGA-- 509
BSNT_01870___ 505 GTACAGCAGC----TGA--TGAAACGTCTCGAATTGCGGGATCTCAGCCT 548
.||||||| .|| ||||.|||.|.||.||| ||.||
BL03239___yit 510 --TCAGCAGCGCGAAGAACTGAAGCGTTTTGACTTG---------AGTCT 548
BSNT_01870___ 549 TCAGCCGGAGAAACTGCAACA-GCGCCCGCTTTTATTTTGGCACGGCGCA 597
.||||||||.|||.|| |||| |.|.|||||||||||||||||||||
BL03239___yit 549 GCAGCCGGACAAATTG-AACATGAGGCCGCTTTTATTTTGGCACGGC--- 594
BSNT_01870___ 598 AAAGATAAGGTCG-------------TGCCTT-ACGCGCCGACCCGGAAA 633
||| .|||.|| |||.|| |||||||| .
BL03239___yit 595 AAA---CAGGACGGCACCGTTCCATTTGCTTTAACGCGCCG--------C 633
BSNT_01870___ 634 TTTTATGACACGATCAAATCCCATTACAGCGAG--CAGCCGGAACGCCTG 681
||.|||||..|||| .||.|||.|..|...|| |.|||.||....|||
BL03239___yit 634 TTCTATGAATCGAT--TATTCCACTGTATGAAGCTCGGCCTGATTTGCTG 681
BSNT_01870___ 682 CAATTTATCGGAGATGAAAACGCTGAC----CATAAAGTCCCGCGGGCAG 727
||.|||||||.|||||| ||.|.| ||||||||..||.|||.||
BL03239___yit 682 CATTTTATCGAAGATGA----GCGGGCCGGACATAAAGTATCGAGGGAAG 727
BSNT_01870___ 728 CTGTGTTAAAAACGATTGAATGGTTTGAAACGTACTTATAA 768
...|.||.|||||..|.|||||||||||..||.||||.|||
BL03239___yit 728 GCCTTTTGAAAACAGTCGAATGGTTTGACGCGCACTTGTAA 768
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