Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05209 and BL03218

See Amino acid alignment / Visit BSNT_05209 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:20
# Commandline: needle
#    -asequence dna-align/BSNT_05209___yvdS.1.5803.seq
#    -bsequence dna-align/BL03218___yvdS.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05209___yvdS-BL03218___yvdS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05209___yvdS-BL03218___yvdS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05209___yvdS
# 2: BL03218___yvdS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 342
# Identity:     242/342 (70.8%)
# Similarity:   242/342 (70.8%)
# Gaps:          12/342 ( 3.5%)
# Score: 814.0
# 
#
#=======================================

BSNT_05209___      1 TTGAATTGGGTTCTTGTTTTTATTGCAGGGCTTTTAGAGGTTGTTTGGGC     50
                     ||||.||||.|.||.||..||..|||.||..||||.||.||.||.|||||
BL03218___yvd      1 TTGAGTTGGCTCCTCGTAATTGCTGCGGGTTTTTTGGAAGTGGTGTGGGC     50

BSNT_05209___     51 CTCTTCCCTCAAACATGCCGATTCGCTTTTGGATTGGATCATCATTTTTA    100
                     |||....||.||||||||.|||||..|..|.||||||.|.||.||.|||.
BL03218___yvd     51 CTCAGGTCTTAAACATGCGGATTCATTCGTCGATTGGCTGATGATCTTTG    100

BSNT_05209___    101 TCTTAATCGCGGTCAGCTTTATCCTGTTGATCCGCTCTTATCA-AAAAAT    149
                     |..|.||||||||.||||||||..||.||||.||.||||| || .||.||
BL03218___yvd    101 TACTGATCGCGGTAAGCTTTATTATGCTGATACGATCTTA-CAGGAACAT    149

BSNT_05209___    150 CCCGATGGCCGCGGCGTACACTGTGTTTGTGGGAATCGGAACCGTCGGAA    199
                     .||||||||..||||.||.||.||.|||||.||.||||||||.|.|||.|
BL03218___yvd    150 TCCGATGGCGTCGGCTTATACCGTATTTGTCGGGATCGGAACGGCCGGCA    199

BSNT_05209___    200 CATATCTGACTGGAATTGTTCTGGGCGAATCCTTCTCAGCAGCCCAAATG    249
                     |||||.||||.||.|||.||.|||||||..||||.||||.||..|||||.
BL03218___yvd    200 CATATGTGACGGGTATTTTTATGGGCGAGACCTTTTCAGGAGGGCAAATA    249

BSNT_05209___    250 TTCTTTTTAGCTTTAT-----TGCTGGCTGGCATTTTAGGAATGAAATTA    294
                     ||||||     ||.||     ||.|||..||||||.|.||.|||||..|.
BL03218___yvd    250 TTCTTT-----TTGATCGTGCTGTTGGGAGGCATTATTGGCATGAAGATG    294

BSNT_05209___    295 TTTACGAAAGAAAGCAAATCTCAACCGGGAGGTGAACAATAA    336
                     |||||.|||||.|.|||..|.||..|.||||||||..|||.|
BL03218___yvd    295 TTTACAAAAGAGAACAATGCCCAGTCAGGAGGTGATGAATGA    336


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