Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_05211 and BL03217

See Amino acid alignment / Visit BSNT_05211 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:20
# Commandline: needle
#    -asequence dna-align/BSNT_05211___yvdR.1.5803.seq
#    -bsequence dna-align/BL03217___yvdR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05211___yvdR-BL03217___yvdR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05211___yvdR-BL03217___yvdR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05211___yvdR
# 2: BL03217___yvdR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 322
# Identity:     240/322 (74.5%)
# Similarity:   240/322 (74.5%)
# Gaps:           5/322 ( 1.6%)
# Score: 872.0
# 
#
#=======================================

BSNT_05211___      1 ATGGCATGGTTTTTATTAGTGATTGCCGGCATTGAAGAAATTATAGCTGC     50
                     |||.|||||.|.||.|||||||||.||||.||.|||||..||||.||.||
BL03217___yvd      1 ATGCCATGGATGTTTTTAGTGATTTCCGGAATCGAAGAGGTTATTGCCGC     50

BSNT_05211___     51 CATTGCCATGAAATATATTGATGGGACAAGAAAAAAATGGCCGATCATTG    100
                     |||.||.|||||||||.|.||.||.||||||||||||||||||||.||.|
BL03217___yvd     51 CATCGCTATGAAATATGTAGACGGCACAAGAAAAAAATGGCCGATTATCG    100

BSNT_05211___    101 TGATGACGCTTGGATTCGGCTTATCCTTTTACTGCCTGTCCCAAGCGATG    150
                     |.|||..|.|.||.||.|||||.||.||||.||||||.||..||||.|||
BL03217___yvd    101 TCATGGTGTTGGGGTTTGGCTTGTCTTTTTTCTGCCTTTCAAAAGCAATG    150

BSNT_05211___    151 ATCGTCCTGCCTGCCGGAGTCGCTTATGCCGTCTGGACCGGCATTGGCAG    200
                     ....|.||..|.|||||.||.||.||||||||.||||||||.||.|||||
BL03217___yvd    151 CAGATGCTATCAGCCGGTGTTGCATATGCCGTATGGACCGGAATCGGCAG    200

BSNT_05211___    201 CATTGGCGTTTCGGCGGTCGGGCTCATCTGGTTTAAGGAGCGGTTTC-AG    249
                     |||.|||.||.||||.|||.|..|..|.||||||||||||||..||| .|
BL03217___yvd    201 CATCGGCATTACGGCAGTCAGTTTATTTTGGTTTAAGGAGCGTATTCGTG    250

BSNT_05211___    250 CTTTCACAGGTGATTTCACTTTGCCTTATCCTAGCCGGCGTCATCGGCCT    299
                     | |.|.|||.|.||.||.|||.||.||||..||..|||.||.||||||||
BL03217___yvd    251 C-TCCGCAGCTCATCTCGCTTGGCTTTATTATAATCGGGGTGATCGGCCT    299

BSNT_05211___    300 GCGTCTTACGTCATCTTCATAA    321
                     |||.|||||.|||||||.|   
BL03217___yvd    300 GCGCCTTACATCATCTTAA---    318


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.